miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 21913 0.75 0.489542
Target:  5'- gCGGaCAACAacuGCAGCCGCCGGCAUcgGGUAg -3'
miRNA:   3'- -GUC-GUUGU---CGUCGGUGGCUGUG--UCGU- -5'
29795 3' -56 NC_006273.1 + 189794 0.77 0.417008
Target:  5'- gAGCcGCGGCcauGGCCGCCuGCACGGCAg -3'
miRNA:   3'- gUCGuUGUCG---UCGGUGGcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 197075 0.76 0.434536
Target:  5'- gCGGCAGCAGCGGCggCGCCGACGguGa- -3'
miRNA:   3'- -GUCGUUGUCGUCG--GUGGCUGUguCgu -5'
29795 3' -56 NC_006273.1 + 218195 0.76 0.434536
Target:  5'- uGGCAugGGCGGCgGCCGACGgcggacgacCGGCAu -3'
miRNA:   3'- gUCGUugUCGUCGgUGGCUGU---------GUCGU- -5'
29795 3' -56 NC_006273.1 + 204184 0.76 0.434536
Target:  5'- gCGGCAACcagGGCAGCCuggacGCCGGC-CGGCAa -3'
miRNA:   3'- -GUCGUUG---UCGUCGG-----UGGCUGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 34228 0.76 0.452484
Target:  5'- gGGCAacccGCGGCacagGGCCGCCGGCagGCAGCGg -3'
miRNA:   3'- gUCGU----UGUCG----UCGGUGGCUG--UGUCGU- -5'
29795 3' -56 NC_006273.1 + 69685 0.76 0.46069
Target:  5'- gCAGCAGgAGCugacGGCCGCCGAUcgcguagGCAGCGg -3'
miRNA:   3'- -GUCGUUgUCG----UCGGUGGCUG-------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 87747 0.75 0.48014
Target:  5'- uGGCuGCGGCGGCCGuuGuCGCGGCGu -3'
miRNA:   3'- gUCGuUGUCGUCGGUggCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 214990 0.75 0.48014
Target:  5'- gGGCGACgccgcugcuguGGCAGCgACCGuCGCAGCGa -3'
miRNA:   3'- gUCGUUG-----------UCGUCGgUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 145786 0.77 0.408408
Target:  5'- gUAGUAGCGGCAGCCACCG-CGaGGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUGGCuGUgUCGu -5'
29795 3' -56 NC_006273.1 + 177932 0.77 0.383283
Target:  5'- aCAGacaAACAGaCAGCCAcacCCGACACAGCc -3'
miRNA:   3'- -GUCg--UUGUC-GUCGGU---GGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 194671 0.78 0.375139
Target:  5'- -cGCAACGGCAGUgcgcacaaagCGCCgGACACAGCAc -3'
miRNA:   3'- guCGUUGUCGUCG----------GUGG-CUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 105397 0.84 0.160228
Target:  5'- -uGCAACAGCAGCCGCCGGucgagcccgUGCAGCAg -3'
miRNA:   3'- guCGUUGUCGUCGGUGGCU---------GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 232962 0.83 0.172753
Target:  5'- cCAGCucggGCAGCAGCCGCCG-CGCGGCc -3'
miRNA:   3'- -GUCGu---UGUCGUCGGUGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 67581 0.81 0.226391
Target:  5'- aCAGCAACGGCAGCUACUGG-ACGGCu -3'
miRNA:   3'- -GUCGUUGUCGUCGGUGGCUgUGUCGu -5'
29795 3' -56 NC_006273.1 + 167320 0.81 0.243291
Target:  5'- aCAGCGGCGGCAGCgGCgGcCACGGCGg -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGgCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 73744 0.79 0.300307
Target:  5'- uGGCGGCGGCGGCCGaggcCCGGCAgCGGCGc -3'
miRNA:   3'- gUCGUUGUCGUCGGU----GGCUGU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 22296 0.79 0.307244
Target:  5'- -uGCGGCAGCGGUacCCGACGCGGCAg -3'
miRNA:   3'- guCGUUGUCGUCGguGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 35882 0.79 0.314302
Target:  5'- cCAGCAugaugccguGCAGCGGCgGCCaGCACAGCGg -3'
miRNA:   3'- -GUCGU---------UGUCGUCGgUGGcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 7698 0.78 0.35142
Target:  5'- gCGGCGGCGGCAGUgGCCGcgGCAGCGg -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGGCugUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.