Results 21 - 40 of 409 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29795 | 3' | -56 | NC_006273.1 | + | 21913 | 0.75 | 0.489542 |
Target: 5'- gCGGaCAACAacuGCAGCCGCCGGCAUcgGGUAg -3' miRNA: 3'- -GUC-GUUGU---CGUCGGUGGCUGUG--UCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 214990 | 0.75 | 0.48014 |
Target: 5'- gGGCGACgccgcugcuguGGCAGCgACCGuCGCAGCGa -3' miRNA: 3'- gUCGUUG-----------UCGUCGgUGGCuGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 7698 | 0.78 | 0.35142 |
Target: 5'- gCGGCGGCGGCAGUgGCCGcgGCAGCGg -3' miRNA: 3'- -GUCGUUGUCGUCGgUGGCugUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 35882 | 0.79 | 0.314302 |
Target: 5'- cCAGCAugaugccguGCAGCGGCgGCCaGCACAGCGg -3' miRNA: 3'- -GUCGU---------UGUCGUCGgUGGcUGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 22296 | 0.79 | 0.307244 |
Target: 5'- -uGCGGCAGCGGUacCCGACGCGGCAg -3' miRNA: 3'- guCGUUGUCGUCGguGGCUGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 73744 | 0.79 | 0.300307 |
Target: 5'- uGGCGGCGGCGGCCGaggcCCGGCAgCGGCGc -3' miRNA: 3'- gUCGUUGUCGUCGGU----GGCUGU-GUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 167320 | 0.81 | 0.243291 |
Target: 5'- aCAGCGGCGGCAGCgGCgGcCACGGCGg -3' miRNA: 3'- -GUCGUUGUCGUCGgUGgCuGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 67581 | 0.81 | 0.226391 |
Target: 5'- aCAGCAACGGCAGCUACUGG-ACGGCu -3' miRNA: 3'- -GUCGUUGUCGUCGGUGGCUgUGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 232962 | 0.83 | 0.172753 |
Target: 5'- cCAGCucggGCAGCAGCCGCCG-CGCGGCc -3' miRNA: 3'- -GUCGu---UGUCGUCGGUGGCuGUGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 105397 | 0.84 | 0.160228 |
Target: 5'- -uGCAACAGCAGCCGCCGGucgagcccgUGCAGCAg -3' miRNA: 3'- guCGUUGUCGUCGGUGGCU---------GUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 194671 | 0.78 | 0.375139 |
Target: 5'- -cGCAACGGCAGUgcgcacaaagCGCCgGACACAGCAc -3' miRNA: 3'- guCGUUGUCGUCG----------GUGG-CUGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 177932 | 0.77 | 0.383283 |
Target: 5'- aCAGacaAACAGaCAGCCAcacCCGACACAGCc -3' miRNA: 3'- -GUCg--UUGUC-GUCGGU---GGCUGUGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 87747 | 0.75 | 0.48014 |
Target: 5'- uGGCuGCGGCGGCCGuuGuCGCGGCGu -3' miRNA: 3'- gUCGuUGUCGUCGGUggCuGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 69685 | 0.76 | 0.46069 |
Target: 5'- gCAGCAGgAGCugacGGCCGCCGAUcgcguagGCAGCGg -3' miRNA: 3'- -GUCGUUgUCG----UCGGUGGCUG-------UGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 34228 | 0.76 | 0.452484 |
Target: 5'- gGGCAacccGCGGCacagGGCCGCCGGCagGCAGCGg -3' miRNA: 3'- gUCGU----UGUCG----UCGGUGGCUG--UGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 204184 | 0.76 | 0.434536 |
Target: 5'- gCGGCAACcagGGCAGCCuggacGCCGGC-CGGCAa -3' miRNA: 3'- -GUCGUUG---UCGUCGG-----UGGCUGuGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 218195 | 0.76 | 0.434536 |
Target: 5'- uGGCAugGGCGGCgGCCGACGgcggacgacCGGCAu -3' miRNA: 3'- gUCGUugUCGUCGgUGGCUGU---------GUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 197075 | 0.76 | 0.434536 |
Target: 5'- gCGGCAGCAGCGGCggCGCCGACGguGa- -3' miRNA: 3'- -GUCGUUGUCGUCG--GUGGCUGUguCgu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 189794 | 0.77 | 0.417008 |
Target: 5'- gAGCcGCGGCcauGGCCGCCuGCACGGCAg -3' miRNA: 3'- gUCGuUGUCG---UCGGUGGcUGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 145786 | 0.77 | 0.408408 |
Target: 5'- gUAGUAGCGGCAGCCACCG-CGaGGCc -3' miRNA: 3'- -GUCGUUGUCGUCGGUGGCuGUgUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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