miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 73744 0.79 0.300307
Target:  5'- uGGCGGCGGCGGCCGaggcCCGGCAgCGGCGc -3'
miRNA:   3'- gUCGUUGUCGUCGGU----GGCUGU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 167320 0.81 0.243291
Target:  5'- aCAGCGGCGGCAGCgGCgGcCACGGCGg -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGgCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 67581 0.81 0.226391
Target:  5'- aCAGCAACGGCAGCUACUGG-ACGGCu -3'
miRNA:   3'- -GUCGUUGUCGUCGGUGGCUgUGUCGu -5'
29795 3' -56 NC_006273.1 + 232962 0.83 0.172753
Target:  5'- cCAGCucggGCAGCAGCCGCCG-CGCGGCc -3'
miRNA:   3'- -GUCGu---UGUCGUCGGUGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 105397 0.84 0.160228
Target:  5'- -uGCAACAGCAGCCGCCGGucgagcccgUGCAGCAg -3'
miRNA:   3'- guCGUUGUCGUCGGUGGCU---------GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 218195 0.76 0.434536
Target:  5'- uGGCAugGGCGGCgGCCGACGgcggacgacCGGCAu -3'
miRNA:   3'- gUCGUugUCGUCGgUGGCUGU---------GUCGU- -5'
29795 3' -56 NC_006273.1 + 204184 0.76 0.434536
Target:  5'- gCGGCAACcagGGCAGCCuggacGCCGGC-CGGCAa -3'
miRNA:   3'- -GUCGUUG---UCGUCGG-----UGGCUGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 213902 0.74 0.557486
Target:  5'- cCGGUGGCGGCaugAGCCACCaGCugAGCAc -3'
miRNA:   3'- -GUCGUUGUCG---UCGGUGGcUGugUCGU- -5'
29795 3' -56 NC_006273.1 + 98693 0.74 0.547585
Target:  5'- -cGCGGCGGCGGCgACCGGC-CGGUc -3'
miRNA:   3'- guCGUUGUCGUCGgUGGCUGuGUCGu -5'
29795 3' -56 NC_006273.1 + 71725 0.74 0.547585
Target:  5'- cCAGC-GC-GCAGCC-UCGACACAGCGg -3'
miRNA:   3'- -GUCGuUGuCGUCGGuGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 167182 0.74 0.53774
Target:  5'- aCGGCGggcGCAGCGGCCgcggagGCCGGCguaaACAGCGu -3'
miRNA:   3'- -GUCGU---UGUCGUCGG------UGGCUG----UGUCGU- -5'
29795 3' -56 NC_006273.1 + 203894 0.74 0.536759
Target:  5'- cCAGCGuuacccaACAGCAGCCcagGCCGACGaggaGGCGc -3'
miRNA:   3'- -GUCGU-------UGUCGUCGG---UGGCUGUg---UCGU- -5'
29795 3' -56 NC_006273.1 + 33430 0.75 0.527957
Target:  5'- uCGGCGGCGcGCgacAGCC-CCGGCGCAGCu -3'
miRNA:   3'- -GUCGUUGU-CG---UCGGuGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 148907 0.75 0.518241
Target:  5'- aAGuCAGCAGCAG-CACCGGCGguGCGc -3'
miRNA:   3'- gUC-GUUGUCGUCgGUGGCUGUguCGU- -5'
29795 3' -56 NC_006273.1 + 163847 0.75 0.499029
Target:  5'- -cGcCGGCAGCGGCCGCCGGCGagGGCc -3'
miRNA:   3'- guC-GUUGUCGUCGGUGGCUGUg-UCGu -5'
29795 3' -56 NC_006273.1 + 21913 0.75 0.489542
Target:  5'- gCGGaCAACAacuGCAGCCGCCGGCAUcgGGUAg -3'
miRNA:   3'- -GUC-GUUGU---CGUCGGUGGCUGUG--UCGU- -5'
29795 3' -56 NC_006273.1 + 214990 0.75 0.48014
Target:  5'- gGGCGACgccgcugcuguGGCAGCgACCGuCGCAGCGa -3'
miRNA:   3'- gUCGUUG-----------UCGUCGgUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 87747 0.75 0.48014
Target:  5'- uGGCuGCGGCGGCCGuuGuCGCGGCGu -3'
miRNA:   3'- gUCGuUGUCGUCGGUggCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 69685 0.76 0.46069
Target:  5'- gCAGCAGgAGCugacGGCCGCCGAUcgcguagGCAGCGg -3'
miRNA:   3'- -GUCGUUgUCG----UCGGUGGCUG-------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 34228 0.76 0.452484
Target:  5'- gGGCAacccGCGGCacagGGCCGCCGGCagGCAGCGg -3'
miRNA:   3'- gUCGU----UGUCG----UCGGUGGCUG--UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.