miRNA display CGI


Results 81 - 100 of 409 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 35012 0.72 0.678337
Target:  5'- gAGCGACGGCGGUaaaGCCaGACAgCGGCu -3'
miRNA:   3'- gUCGUUGUCGUCGg--UGG-CUGU-GUCGu -5'
29795 3' -56 NC_006273.1 + 132359 0.72 0.678337
Target:  5'- aAGCcGCGGCcGCUGCCGcCGCGGCGu -3'
miRNA:   3'- gUCGuUGUCGuCGGUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 194818 0.72 0.688356
Target:  5'- cCGGCAGCGcGCAGaaagCGCCGugGaCAGCAa -3'
miRNA:   3'- -GUCGUUGU-CGUCg---GUGGCugU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 66841 0.71 0.69833
Target:  5'- aGGCGGCcuGCAGCUACCcgaaguGCGCAGCGc -3'
miRNA:   3'- gUCGUUGu-CGUCGGUGGc-----UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 101742 0.71 0.708248
Target:  5'- aGGCucaGACGGCGGUCGCCGGC--GGCAu -3'
miRNA:   3'- gUCG---UUGUCGUCGGUGGCUGugUCGU- -5'
29795 3' -56 NC_006273.1 + 133474 0.71 0.708248
Target:  5'- aCGGCGGCGuGCAGgCGCgGACGCuGGCGg -3'
miRNA:   3'- -GUCGUUGU-CGUCgGUGgCUGUG-UCGU- -5'
29795 3' -56 NC_006273.1 + 141204 0.71 0.717122
Target:  5'- gAGCGACAGCAGCaucaguuuCugCGGCguaccuacggaccGCAGCAc -3'
miRNA:   3'- gUCGUUGUCGUCG--------GugGCUG-------------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 59497 0.73 0.637973
Target:  5'- aCAGCGACAGCuGcCCAUCGcgACAGCGc -3'
miRNA:   3'- -GUCGUUGUCGuC-GGUGGCugUGUCGU- -5'
29795 3' -56 NC_006273.1 + 233333 0.73 0.62785
Target:  5'- aCAGCAgaccccACGGCuccuGCCAUCGcGCACGGCGc -3'
miRNA:   3'- -GUCGU------UGUCGu---CGGUGGC-UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 88139 0.73 0.62785
Target:  5'- uCAGCGAC-GCGGCCAgCGccuCGCAGCc -3'
miRNA:   3'- -GUCGUUGuCGUCGGUgGCu--GUGUCGu -5'
29795 3' -56 NC_006273.1 + 98693 0.74 0.547585
Target:  5'- -cGCGGCGGCGGCgACCGGC-CGGUc -3'
miRNA:   3'- guCGUUGUCGUCGgUGGCUGuGUCGu -5'
29795 3' -56 NC_006273.1 + 213902 0.74 0.557486
Target:  5'- cCGGUGGCGGCaugAGCCACCaGCugAGCAc -3'
miRNA:   3'- -GUCGUUGUCG---UCGGUGGcUGugUCGU- -5'
29795 3' -56 NC_006273.1 + 22143 0.74 0.567437
Target:  5'- gCGGUAGCGGCGGCgGCCGuCucugaggaagaGCAGCAg -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGGCuG-----------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 162785 0.74 0.567437
Target:  5'- gCGGCGGCAGCGGCCGCaUGuCGCuGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUG-GCuGUGuCGu -5'
29795 3' -56 NC_006273.1 + 102081 0.74 0.577433
Target:  5'- gAGCAGCGGCGGCCAC--ACGCGGg- -3'
miRNA:   3'- gUCGUUGUCGUCGGUGgcUGUGUCgu -5'
29795 3' -56 NC_006273.1 + 51592 0.73 0.587467
Target:  5'- uGGCGGCGGCAGCgGggucuucuuCCGACACgGGCGa -3'
miRNA:   3'- gUCGUUGUCGUCGgU---------GGCUGUG-UCGU- -5'
29795 3' -56 NC_006273.1 + 37720 0.73 0.587467
Target:  5'- aAGCAGCuGUcGCCgcguagaaACCGACGCAGCGu -3'
miRNA:   3'- gUCGUUGuCGuCGG--------UGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 116754 0.73 0.587467
Target:  5'- uCAGCGGCAGCuagccGGCCucucgcucuccaGCCGGCGCuGCGa -3'
miRNA:   3'- -GUCGUUGUCG-----UCGG------------UGGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 153435 0.73 0.606613
Target:  5'- cCGGC-ACGGCGGgCGCCGGCAagacuucCAGCAu -3'
miRNA:   3'- -GUCGuUGUCGUCgGUGGCUGU-------GUCGU- -5'
29795 3' -56 NC_006273.1 + 117204 0.71 0.718105
Target:  5'- gGGCGACAGCcgcagucaGGCCGCC-ACGcCGGCGg -3'
miRNA:   3'- gUCGUUGUCG--------UCGGUGGcUGU-GUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.