miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 147786 0.74 0.581442
Target:  5'- -cGCAACAGCGGCgACgGACggcgucgcaucaucaACAGCAg -3'
miRNA:   3'- guCGUUGUCGUCGgUGgCUG---------------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 72600 0.74 0.557485
Target:  5'- gCAGCGACAuGCGGCCGCUGcCGCcGCc -3'
miRNA:   3'- -GUCGUUGU-CGUCGGUGGCuGUGuCGu -5'
29795 3' -56 NC_006273.1 + 234609 0.78 0.375139
Target:  5'- -cGCAACGGCAGUgcgcacaaagCGCCgGACACAGCAc -3'
miRNA:   3'- guCGUUGUCGUCG----------GUGG-CUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 38069 0.83 0.172752
Target:  5'- cCAGCucggGCAGCAGCCGCCG-CGCGGCc -3'
miRNA:   3'- -GUCGu---UGUCGUCGGUGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 80827 0.72 0.688356
Target:  5'- uGGCAACGacGUGGCCGCgGGgCGCAGCGc -3'
miRNA:   3'- gUCGUUGU--CGUCGGUGgCU-GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 203071 0.73 0.607622
Target:  5'- uCAGCAACAGUAuuccCCGCUGuCGCGGCGg -3'
miRNA:   3'- -GUCGUUGUCGUc---GGUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 133750 0.75 0.508596
Target:  5'- cUAGCGACGGCGGCCAUgGAgcugcacucaCGCGGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUGgCU----------GUGUCGu -5'
29795 3' -56 NC_006273.1 + 214161 0.84 0.168483
Target:  5'- uCAGCAGCGGCAGCCACagCGGCgGCAGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUG--GCUG-UGUCGu -5'
29795 3' -56 NC_006273.1 + 161794 0.73 0.607622
Target:  5'- gCGGCAGCGGCAGCgGCgGGC-CAGg- -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGgCUGuGUCgu -5'
29795 3' -56 NC_006273.1 + 122825 0.88 0.088567
Target:  5'- aAGCAcCGGCGGCCGCUGACGCGGCGa -3'
miRNA:   3'- gUCGUuGUCGUCGGUGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 81594 0.75 0.527957
Target:  5'- -cGCAgGCGGCGGCCGCgGcCGCGGCGg -3'
miRNA:   3'- guCGU-UGUCGUCGGUGgCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 22967 0.73 0.587466
Target:  5'- uGGguGCAGCAGUaCGCCGAgaaaCACGGCGg -3'
miRNA:   3'- gUCguUGUCGUCG-GUGGCU----GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 190133 0.76 0.461607
Target:  5'- gCGGCGcgAGCAGCCGCCGG-GCGGCAc -3'
miRNA:   3'- -GUCGUugUCGUCGGUGGCUgUGUCGU- -5'
29795 3' -56 NC_006273.1 + 135874 0.77 0.391543
Target:  5'- aCAGCAGCAGCcGCCGCCGcCACcaccGGUAc -3'
miRNA:   3'- -GUCGUUGUCGuCGGUGGCuGUG----UCGU- -5'
29795 3' -56 NC_006273.1 + 116994 0.8 0.280227
Target:  5'- gCAGCAGCGGCGGCUAacaCGACACuAGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUg--GCUGUG-UCGu -5'
29795 3' -56 NC_006273.1 + 162231 0.83 0.195572
Target:  5'- aAGCGGCGguagaaacgucGCAGCCACCGGCGCAGUu -3'
miRNA:   3'- gUCGUUGU-----------CGUCGGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 112758 0.71 0.698329
Target:  5'- -cGCAACAGCAGCUcUCGuGCugGGCGc -3'
miRNA:   3'- guCGUUGUCGUCGGuGGC-UGugUCGU- -5'
29795 3' -56 NC_006273.1 + 162801 0.72 0.688356
Target:  5'- uCAcCAACGGCAGCCGCgGucgcCGCAGCu -3'
miRNA:   3'- -GUcGUUGUCGUCGGUGgCu---GUGUCGu -5'
29795 3' -56 NC_006273.1 + 8271 0.72 0.658195
Target:  5'- gGGCAGCGGCGcauacccacGCCGCCGugGgCGGUg -3'
miRNA:   3'- gUCGUUGUCGU---------CGGUGGCugU-GUCGu -5'
29795 3' -56 NC_006273.1 + 133249 0.73 0.617731
Target:  5'- uGGCGACGGC-GCCACUGcCGCuGCGa -3'
miRNA:   3'- gUCGUUGUCGuCGGUGGCuGUGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.