Results 41 - 60 of 409 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29795 | 3' | -56 | NC_006273.1 | + | 98212 | 0.72 | 0.678336 |
Target: 5'- gCGGCAGCGGCGGCaCcCCGGCuCAGaCGa -3' miRNA: 3'- -GUCGUUGUCGUCG-GuGGCUGuGUC-GU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 133750 | 0.75 | 0.508596 |
Target: 5'- cUAGCGACGGCGGCCAUgGAgcugcacucaCGCGGCc -3' miRNA: 3'- -GUCGUUGUCGUCGGUGgCU----------GUGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 214161 | 0.84 | 0.168483 |
Target: 5'- uCAGCAGCGGCAGCCACagCGGCgGCAGCc -3' miRNA: 3'- -GUCGUUGUCGUCGGUG--GCUG-UGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 131860 | 0.72 | 0.66828 |
Target: 5'- cCGGCuACGGCGGCCGCaucgaCGGCAC-GCAc -3' miRNA: 3'- -GUCGuUGUCGUCGGUG-----GCUGUGuCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 122825 | 0.88 | 0.088567 |
Target: 5'- aAGCAcCGGCGGCCGCUGACGCGGCGa -3' miRNA: 3'- gUCGUuGUCGUCGGUGGCUGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 82771 | 0.7 | 0.75672 |
Target: 5'- gCGGCcguGCAGCgGGCCACCGAgACAcacccgcuggcGCAg -3' miRNA: 3'- -GUCGu--UGUCG-UCGGUGGCUgUGU-----------CGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 162231 | 0.83 | 0.195572 |
Target: 5'- aAGCGGCGguagaaacgucGCAGCCACCGGCGCAGUu -3' miRNA: 3'- gUCGUUGU-----------CGUCGGUGGCUGUGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 92541 | 0.7 | 0.75672 |
Target: 5'- gCAGCAgACAGCAGCCcgugGCCGugAgCAGa- -3' miRNA: 3'- -GUCGU-UGUCGUCGG----UGGCugU-GUCgu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 103031 | 0.71 | 0.744331 |
Target: 5'- gCGGCGGCAGCGGCCGCggcuuccaucaucgUGAUGCAaaccGCAc -3' miRNA: 3'- -GUCGUUGUCGUCGGUG--------------GCUGUGU----CGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 233669 | 0.71 | 0.718104 |
Target: 5'- uCGGCc-CAGUcGCCACCGcCGCGGCGg -3' miRNA: 3'- -GUCGuuGUCGuCGGUGGCuGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 149565 | 0.71 | 0.708248 |
Target: 5'- aCGGUGGCGGCGGCCGggcCCGugGaggaGGCAa -3' miRNA: 3'- -GUCGUUGUCGUCGGU---GGCugUg---UCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 112758 | 0.71 | 0.698329 |
Target: 5'- -cGCAACAGCAGCUcUCGuGCugGGCGc -3' miRNA: 3'- guCGUUGUCGUCGGuGGC-UGugUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 162801 | 0.72 | 0.688356 |
Target: 5'- uCAcCAACGGCAGCCGCgGucgcCGCAGCu -3' miRNA: 3'- -GUcGUUGUCGUCGGUGgCu---GUGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 38440 | 0.73 | 0.62785 |
Target: 5'- aCAGCAgaccccACGGCuccuGCCAUCGcGCACGGCGc -3' miRNA: 3'- -GUCGU------UGUCGu---CGGUGGC-UGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 161794 | 0.73 | 0.607622 |
Target: 5'- gCGGCAGCGGCAGCgGCgGGC-CAGg- -3' miRNA: 3'- -GUCGUUGUCGUCGgUGgCUGuGUCgu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 147786 | 0.74 | 0.581442 |
Target: 5'- -cGCAACAGCGGCgACgGACggcgucgcaucaucaACAGCAg -3' miRNA: 3'- guCGUUGUCGUCGgUGgCUG---------------UGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 72600 | 0.74 | 0.557485 |
Target: 5'- gCAGCGACAuGCGGCCGCUGcCGCcGCc -3' miRNA: 3'- -GUCGUUGU-CGUCGGUGGCuGUGuCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 190133 | 0.76 | 0.461607 |
Target: 5'- gCGGCGcgAGCAGCCGCCGG-GCGGCAc -3' miRNA: 3'- -GUCGUugUCGUCGGUGGCUgUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 135874 | 0.77 | 0.391543 |
Target: 5'- aCAGCAGCAGCcGCCGCCGcCACcaccGGUAc -3' miRNA: 3'- -GUCGUUGUCGuCGGUGGCuGUG----UCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 116994 | 0.8 | 0.280227 |
Target: 5'- gCAGCAGCGGCGGCUAacaCGACACuAGCc -3' miRNA: 3'- -GUCGUUGUCGUCGGUg--GCUGUG-UCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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