miRNA display CGI


Results 61 - 80 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 162801 0.72 0.688356
Target:  5'- uCAcCAACGGCAGCCGCgGucgcCGCAGCu -3'
miRNA:   3'- -GUcGUUGUCGUCGGUGgCu---GUGUCGu -5'
29795 3' -56 NC_006273.1 + 124251 0.71 0.698329
Target:  5'- --aCAACAGCAGCCuCCGuaACAGCAc -3'
miRNA:   3'- gucGUUGUCGUCGGuGGCugUGUCGU- -5'
29795 3' -56 NC_006273.1 + 80380 0.81 0.249153
Target:  5'- aAGCGGgAGCGGCgGCCGugGCGGCGg -3'
miRNA:   3'- gUCGUUgUCGUCGgUGGCugUGUCGU- -5'
29795 3' -56 NC_006273.1 + 212025 0.79 0.307243
Target:  5'- aGGCGAaugcGCAGCCGCUGACACAGUc -3'
miRNA:   3'- gUCGUUgu--CGUCGGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 47289 0.76 0.425718
Target:  5'- aCGGCAGCGGCuGUCGCuuCGACACGGUg -3'
miRNA:   3'- -GUCGUUGUCGuCGGUG--GCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 196994 0.76 0.470827
Target:  5'- -cGCAGCGGCGGCgACgGACgGCGGCGg -3'
miRNA:   3'- guCGUUGUCGUCGgUGgCUG-UGUCGU- -5'
29795 3' -56 NC_006273.1 + 8024 0.74 0.567437
Target:  5'- uGGCGGCGGCAgacccaacaugcGCCGaaGACACAGCu -3'
miRNA:   3'- gUCGUUGUCGU------------CGGUggCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 22967 0.73 0.587466
Target:  5'- uGGguGCAGCAGUaCGCCGAgaaaCACGGCGg -3'
miRNA:   3'- gUCguUGUCGUCG-GUGGCU----GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 203071 0.73 0.607622
Target:  5'- uCAGCAACAGUAuuccCCGCUGuCGCGGCGg -3'
miRNA:   3'- -GUCGUUGUCGUc---GGUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 231716 0.73 0.62785
Target:  5'- uCGGCGuCGGCAuGCCGCUGAuCGCAGUg -3'
miRNA:   3'- -GUCGUuGUCGU-CGGUGGCU-GUGUCGu -5'
29795 3' -56 NC_006273.1 + 178547 0.69 0.827398
Target:  5'- uGGUAGCGGCAGCCucucuucGCUGGCuaaugcCGGCGg -3'
miRNA:   3'- gUCGUUGUCGUCGG-------UGGCUGu-----GUCGU- -5'
29795 3' -56 NC_006273.1 + 39880 0.69 0.819819
Target:  5'- -cGCAACAG-GGCCGCgGACugGGUc -3'
miRNA:   3'- guCGUUGUCgUCGGUGgCUGugUCGu -5'
29795 3' -56 NC_006273.1 + 182832 0.71 0.718104
Target:  5'- uGGCAACGGCGGCgacgaGCuCGGCugcuGCAGCAc -3'
miRNA:   3'- gUCGUUGUCGUCGg----UG-GCUG----UGUCGU- -5'
29795 3' -56 NC_006273.1 + 72467 0.71 0.737592
Target:  5'- uCGGUGcCGGCGGCCAcguCCGuCACGGCGu -3'
miRNA:   3'- -GUCGUuGUCGUCGGU---GGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 92541 0.7 0.75672
Target:  5'- gCAGCAgACAGCAGCCcgugGCCGugAgCAGa- -3'
miRNA:   3'- -GUCGU-UGUCGUCGG----UGGCugU-GUCgu -5'
29795 3' -56 NC_006273.1 + 82771 0.7 0.75672
Target:  5'- gCGGCcguGCAGCgGGCCACCGAgACAcacccgcuggcGCAg -3'
miRNA:   3'- -GUCGu--UGUCG-UCGGUGGCUgUGU-----------CGU- -5'
29795 3' -56 NC_006273.1 + 121885 0.7 0.766127
Target:  5'- gGGCAACcc--GCCGCCGGCuACGGCAu -3'
miRNA:   3'- gUCGUUGucguCGGUGGCUG-UGUCGU- -5'
29795 3' -56 NC_006273.1 + 67724 0.7 0.780932
Target:  5'- aCGGCGGCcgaccccgccguuGCGGCCGCCGcuCACAGUc -3'
miRNA:   3'- -GUCGUUGu------------CGUCGGUGGCu-GUGUCGu -5'
29795 3' -56 NC_006273.1 + 90788 0.7 0.802503
Target:  5'- aAGCGccCAGCAGCC-CCGACguggggucgAUAGCAg -3'
miRNA:   3'- gUCGUu-GUCGUCGGuGGCUG---------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 165957 0.69 0.817263
Target:  5'- aCAGCGGCgccgccaugccaggGGuCGGCCAUCGucuCGCAGCGc -3'
miRNA:   3'- -GUCGUUG--------------UC-GUCGGUGGCu--GUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.