miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 92958 0.66 0.982808
Target:  5'- uGACGUgGaGUCGGCcuccACCGCCGUGGCg -3'
miRNA:   3'- -CUGUGgCaUAGUCGa---UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 79806 0.66 0.982808
Target:  5'- cGACGCCGc--CA-CUACUGCCGgAGCc -3'
miRNA:   3'- -CUGUGGCauaGUcGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 164432 0.66 0.982808
Target:  5'- aACACgGUAUugagCAGCaGCaCGCCGCGucGCg -3'
miRNA:   3'- cUGUGgCAUA----GUCGaUG-GCGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 12095 0.66 0.982808
Target:  5'- aACGCCcugggGUCAGCUcauCUGCUGCGAa -3'
miRNA:   3'- cUGUGGca---UAGUCGAu--GGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 30253 0.66 0.982808
Target:  5'- cGAgGCUGUAucuUCGGUUugcCCGCCGgAGCc -3'
miRNA:   3'- -CUgUGGCAU---AGUCGAu--GGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 205006 0.66 0.982808
Target:  5'- aGCGaCGUGaCgAGCUGCgaCGCCGCGACg -3'
miRNA:   3'- cUGUgGCAUaG-UCGAUG--GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 53796 0.66 0.982808
Target:  5'- uACGCCGUGUUgauGGCUACa-UCGCAAa -3'
miRNA:   3'- cUGUGGCAUAG---UCGAUGgcGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 87655 0.66 0.982808
Target:  5'- --uGCUGUGUCgguGGCUGCUGuuGCuGCu -3'
miRNA:   3'- cugUGGCAUAG---UCGAUGGCggCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 135588 0.66 0.981621
Target:  5'- aGCGgCGUGUaCAGCUACCucaugacgcacgccgGCCGUuACg -3'
miRNA:   3'- cUGUgGCAUA-GUCGAUGG---------------CGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 165961 0.66 0.980797
Target:  5'- cGGCGCCGccaugccagggGUCGGCcAUCGUcuCGCAGCg -3'
miRNA:   3'- -CUGUGGCa----------UAGUCGaUGGCG--GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 13585 0.66 0.980797
Target:  5'- -cCGCCGgg-CGGCccggGCCGCCGUg-- -3'
miRNA:   3'- cuGUGGCauaGUCGa---UGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 110522 0.66 0.980797
Target:  5'- cGACGCgcUAUgCGuGCUGCCGCCGCu-- -3'
miRNA:   3'- -CUGUGgcAUA-GU-CGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 199494 0.66 0.980797
Target:  5'- -cCGCUGUGcUGGCcGCCGCUGCAcgGCa -3'
miRNA:   3'- cuGUGGCAUaGUCGaUGGCGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 217987 0.66 0.980797
Target:  5'- cGugGCCGg--CGGCcaUACgCGCgGCAACc -3'
miRNA:   3'- -CugUGGCauaGUCG--AUG-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 38391 0.66 0.980797
Target:  5'- -cCGCCGccGUCcGUcGCCGCCGCuGCg -3'
miRNA:   3'- cuGUGGCa-UAGuCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 177531 0.66 0.980797
Target:  5'- cGGCGgCGUugaacgugGUCcuuuuguuGgUGCCGCCGCGACg -3'
miRNA:   3'- -CUGUgGCA--------UAGu-------CgAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 56716 0.66 0.980797
Target:  5'- -cCACCGcgGUCGuGCUucuugccgccACCGCCGCcACc -3'
miRNA:   3'- cuGUGGCa-UAGU-CGA----------UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 232832 0.66 0.980797
Target:  5'- aGCACC---UCAGCc-UCGCCGCGGCc -3'
miRNA:   3'- cUGUGGcauAGUCGauGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 116706 0.66 0.980797
Target:  5'- cGCGCgGgcccGUCAGU--CCGCUGCAGCc -3'
miRNA:   3'- cUGUGgCa---UAGUCGauGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 69808 0.66 0.980797
Target:  5'- --aGCCGccGUCAGCgucgcuccUACCGCCGCc-- -3'
miRNA:   3'- cugUGGCa-UAGUCG--------AUGGCGGCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.