miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 103525 0.66 0.978616
Target:  5'- --uGCCGUcgauGCgGCCGCCGUAGCc -3'
miRNA:   3'- cugUGGCAuaguCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 56716 0.66 0.980797
Target:  5'- -cCACCGcgGUCGuGCUucuugccgccACCGCCGCcACc -3'
miRNA:   3'- cuGUGGCa-UAGU-CGA----------UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 205006 0.66 0.982808
Target:  5'- aGCGaCGUGaCgAGCUGCgaCGCCGCGACg -3'
miRNA:   3'- cUGUgGCAUaG-UCGAUG--GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 125980 0.66 0.980161
Target:  5'- uGCACCGUGgcggCGGCauugcgcucggacaUGCUGCCG-AACg -3'
miRNA:   3'- cUGUGGCAUa---GUCG--------------AUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 176170 0.66 0.970975
Target:  5'- uGCGCCuUGUCGuuUACUuuGCCGCAGCg -3'
miRNA:   3'- cUGUGGcAUAGUcgAUGG--CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 218739 0.66 0.976256
Target:  5'- cGGCGCCcag-CAGgUACCaGCgGCAACg -3'
miRNA:   3'- -CUGUGGcauaGUCgAUGG-CGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 100177 0.66 0.980587
Target:  5'- gGGCGCCuaggAUCAGgUccgagacAgCGCCGCAGCg -3'
miRNA:   3'- -CUGUGGca--UAGUCgA-------UgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 23356 0.66 0.980375
Target:  5'- aGCgACUGUGUCAGCggcugcgcauucGCCuGCCGCAu- -3'
miRNA:   3'- cUG-UGGCAUAGUCGa-----------UGG-CGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 198712 0.66 0.97601
Target:  5'- aACACCauaggucgugugaGUcGUCGGCUAcCCGCCGCcaGGCc -3'
miRNA:   3'- cUGUGG-------------CA-UAGUCGAU-GGCGGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 68267 0.66 0.970975
Target:  5'- aACGCUGcuagAUCAGCagGCCGaCGCGGCc -3'
miRNA:   3'- cUGUGGCa---UAGUCGa-UGGCgGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 227350 0.66 0.975513
Target:  5'- --aGCUGUGUCuucggcgcauguugGGuCUGCCGCCGCcACc -3'
miRNA:   3'- cugUGGCAUAG--------------UC-GAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 117910 0.66 0.970975
Target:  5'- aACGCCGUAa-GGaaACCGCgGCGGCg -3'
miRNA:   3'- cUGUGGCAUagUCgaUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 215712 0.66 0.976256
Target:  5'- aACGCCGg--CGGUUAUCGCCGaGAUu -3'
miRNA:   3'- cUGUGGCauaGUCGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 39973 0.66 0.973712
Target:  5'- cACACgGUGuuUCGGCagaugcacGCCGCCGgAGCa -3'
miRNA:   3'- cUGUGgCAU--AGUCGa-------UGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 198045 0.66 0.973712
Target:  5'- gGGCcCCGgcccaccUCcGCUGCCGCCaaaGCAACg -3'
miRNA:   3'- -CUGuGGCau-----AGuCGAUGGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 40846 0.66 0.978616
Target:  5'- aACAgCGUggCGGgUACCGUCGaCGGCg -3'
miRNA:   3'- cUGUgGCAuaGUCgAUGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 222808 0.66 0.973712
Target:  5'- aGACGCCuuugagGUucUCGGCcugGCCGCagaGCAGCa -3'
miRNA:   3'- -CUGUGG------CAu-AGUCGa--UGGCGg--CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 209955 0.66 0.973712
Target:  5'- cGGCGCCauagGUGUgCAGCgccaCGCgGCAACa -3'
miRNA:   3'- -CUGUGG----CAUA-GUCGaug-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 71102 0.66 0.970975
Target:  5'- uGugGCCGUGgcaccCGGC-GCCGCCaGCAc- -3'
miRNA:   3'- -CugUGGCAUa----GUCGaUGGCGG-CGUug -5'
29795 5' -54.2 NC_006273.1 + 142780 0.66 0.976256
Target:  5'- cGCGCCGcUGgcgagcaaCAGCaGCCGCCGUcGCu -3'
miRNA:   3'- cUGUGGC-AUa-------GUCGaUGGCGGCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.