miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 70672 0.66 0.973712
Target:  5'- cGACACgGUggCGGCgguggaggGCgCGCgGCAACu -3'
miRNA:   3'- -CUGUGgCAuaGUCGa-------UG-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 174153 0.66 0.973712
Target:  5'- gGGC-CCGcAUCuGCUgcACCGCCGCcucgaGACg -3'
miRNA:   3'- -CUGuGGCaUAGuCGA--UGGCGGCG-----UUG- -5'
29795 5' -54.2 NC_006273.1 + 38391 0.66 0.980797
Target:  5'- -cCGCCGccGUCcGUcGCCGCCGCuGCg -3'
miRNA:   3'- cuGUGGCa-UAGuCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 30253 0.66 0.982808
Target:  5'- cGAgGCUGUAucuUCGGUUugcCCGCCGgAGCc -3'
miRNA:   3'- -CUgUGGCAU---AGUCGAu--GGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 177531 0.66 0.980797
Target:  5'- cGGCGgCGUugaacgugGUCcuuuuguuGgUGCCGCCGCGACg -3'
miRNA:   3'- -CUGUgGCA--------UAGu-------CgAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 87655 0.66 0.982808
Target:  5'- --uGCUGUGUCgguGGCUGCUGuuGCuGCu -3'
miRNA:   3'- cugUGGCAUAG---UCGAUGGCggCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 100177 0.66 0.980587
Target:  5'- gGGCGCCuaggAUCAGgUccgagacAgCGCCGCAGCg -3'
miRNA:   3'- -CUGUGGca--UAGUCgA-------UgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 56716 0.66 0.980797
Target:  5'- -cCACCGcgGUCGuGCUucuugccgccACCGCCGCcACc -3'
miRNA:   3'- cuGUGGCa-UAGU-CGA----------UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 40846 0.66 0.978616
Target:  5'- aACAgCGUggCGGgUACCGUCGaCGGCg -3'
miRNA:   3'- cUGUgGCAuaGUCgAUGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 125980 0.66 0.980161
Target:  5'- uGCACCGUGgcggCGGCauugcgcucggacaUGCUGCCG-AACg -3'
miRNA:   3'- cUGUGGCAUa---GUCG--------------AUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 23356 0.66 0.980375
Target:  5'- aGCgACUGUGUCAGCggcugcgcauucGCCuGCCGCAu- -3'
miRNA:   3'- cUG-UGGCAUAGUCGa-----------UGG-CGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 135588 0.66 0.981621
Target:  5'- aGCGgCGUGUaCAGCUACCucaugacgcacgccgGCCGUuACg -3'
miRNA:   3'- cUGUgGCAUA-GUCGAUGG---------------CGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 196971 0.66 0.973712
Target:  5'- -uCGCuCGUcgCuGUUGCCGCCaccGCAGCg -3'
miRNA:   3'- cuGUG-GCAuaGuCGAUGGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 46265 0.66 0.973712
Target:  5'- cGACACgGUAcugcaUCAGCcGCCGCCa---- -3'
miRNA:   3'- -CUGUGgCAU-----AGUCGaUGGCGGcguug -5'
29795 5' -54.2 NC_006273.1 + 164432 0.66 0.982808
Target:  5'- aACACgGUAUugagCAGCaGCaCGCCGCGucGCg -3'
miRNA:   3'- cUGUGgCAUA----GUCGaUG-GCGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 116706 0.66 0.980797
Target:  5'- cGCGCgGgcccGUCAGU--CCGCUGCAGCc -3'
miRNA:   3'- cUGUGgCa---UAGUCGauGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 31738 0.66 0.970975
Target:  5'- aGugGCuCGgGUCGGCUggucggGCCGUCGCGGa -3'
miRNA:   3'- -CugUG-GCaUAGUCGA------UGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 217987 0.66 0.980797
Target:  5'- cGugGCCGg--CGGCcaUACgCGCgGCAACc -3'
miRNA:   3'- -CugUGGCauaGUCG--AUG-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 79806 0.66 0.982808
Target:  5'- cGACGCCGc--CA-CUACUGCCGgAGCc -3'
miRNA:   3'- -CUGUGGCauaGUcGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 232832 0.66 0.980797
Target:  5'- aGCACC---UCAGCc-UCGCCGCGGCc -3'
miRNA:   3'- cUGUGGcauAGUCGauGGCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.