miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 202707 0.66 0.973447
Target:  5'- aGACugCGUcaCGGCaACCGCUcgggccuGCGACg -3'
miRNA:   3'- -CUGugGCAuaGUCGaUGGCGG-------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 46265 0.66 0.973712
Target:  5'- cGACACgGUAcugcaUCAGCcGCCGCCa---- -3'
miRNA:   3'- -CUGUGgCAU-----AGUCGaUGGCGGcguug -5'
29795 5' -54.2 NC_006273.1 + 140419 0.66 0.978616
Target:  5'- -cCGCCGaga-GGgaGCCGCCGCGAg -3'
miRNA:   3'- cuGUGGCauagUCgaUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 45589 0.66 0.970975
Target:  5'- --uGCCGUGcaggCGGCcAUgGCCGCGGCu -3'
miRNA:   3'- cugUGGCAUa---GUCGaUGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 222808 0.66 0.973712
Target:  5'- aGACGCCuuugagGUucUCGGCcugGCCGCagaGCAGCa -3'
miRNA:   3'- -CUGUGG------CAu-AGUCGa--UGGCGg--CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 227350 0.66 0.975513
Target:  5'- --aGCUGUGUCuucggcgcauguugGGuCUGCCGCCGCcACc -3'
miRNA:   3'- cugUGGCAUAG--------------UC-GAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 39973 0.66 0.973712
Target:  5'- cACACgGUGuuUCGGCagaugcacGCCGCCGgAGCa -3'
miRNA:   3'- cUGUGgCAU--AGUCGa-------UGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 217987 0.66 0.980797
Target:  5'- cGugGCCGg--CGGCcaUACgCGCgGCAACc -3'
miRNA:   3'- -CugUGGCauaGUCG--AUG-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 177531 0.66 0.980797
Target:  5'- cGGCGgCGUugaacgugGUCcuuuuguuGgUGCCGCCGCGACg -3'
miRNA:   3'- -CUGUgGCA--------UAGu-------CgAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 38391 0.66 0.980797
Target:  5'- -cCGCCGccGUCcGUcGCCGCCGCuGCg -3'
miRNA:   3'- cuGUGGCa-UAGuCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 232832 0.66 0.980797
Target:  5'- aGCACC---UCAGCc-UCGCCGCGGCc -3'
miRNA:   3'- cUGUGGcauAGUCGauGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 116706 0.66 0.980797
Target:  5'- cGCGCgGgcccGUCAGU--CCGCUGCAGCc -3'
miRNA:   3'- cUGUGgCa---UAGUCGauGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 125980 0.66 0.980161
Target:  5'- uGCACCGUGgcggCGGCauugcgcucggacaUGCUGCCG-AACg -3'
miRNA:   3'- cUGUGGCAUa---GUCG--------------AUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 103525 0.66 0.978616
Target:  5'- --uGCCGUcgauGCgGCCGCCGUAGCc -3'
miRNA:   3'- cugUGGCAuaguCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 40846 0.66 0.978616
Target:  5'- aACAgCGUggCGGgUACCGUCGaCGGCg -3'
miRNA:   3'- cUGUgGCAuaGUCgAUGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 142780 0.66 0.976256
Target:  5'- cGCGCCGcUGgcgagcaaCAGCaGCCGCCGUcGCu -3'
miRNA:   3'- cUGUGGC-AUa-------GUCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 218739 0.66 0.976256
Target:  5'- cGGCGCCcag-CAGgUACCaGCgGCAACg -3'
miRNA:   3'- -CUGUGGcauaGUCgAUGG-CGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 215712 0.66 0.976256
Target:  5'- aACGCCGg--CGGUUAUCGCCGaGAUu -3'
miRNA:   3'- cUGUGGCauaGUCGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 198712 0.66 0.97601
Target:  5'- aACACCauaggucgugugaGUcGUCGGCUAcCCGCCGCcaGGCc -3'
miRNA:   3'- cUGUGG-------------CA-UAGUCGAU-GGCGGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 198045 0.66 0.973712
Target:  5'- gGGCcCCGgcccaccUCcGCUGCCGCCaaaGCAACg -3'
miRNA:   3'- -CUGuGGCau-----AGuCGAUGGCGG---CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.