miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 162588 0.67 0.957983
Target:  5'- uGCGCCGUcugCGGCUcuacCCGCCcgaGCGGCu -3'
miRNA:   3'- cUGUGGCAua-GUCGAu---GGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 102583 0.67 0.957983
Target:  5'- uGGgGCCGgu---GCUGCCGCCGUcguuGACg -3'
miRNA:   3'- -CUgUGGCauaguCGAUGGCGGCG----UUG- -5'
29795 5' -54.2 NC_006273.1 + 157712 0.67 0.954197
Target:  5'- uGACGCUGUAgucuUCGcGC-GCCGCCGUgAGCa -3'
miRNA:   3'- -CUGUGGCAU----AGU-CGaUGGCGGCG-UUG- -5'
29795 5' -54.2 NC_006273.1 + 234629 0.67 0.96804
Target:  5'- aGCGCCGgacaCAGCa--CGCCGCAAa -3'
miRNA:   3'- cUGUGGCaua-GUCGaugGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 109328 0.67 0.96804
Target:  5'- cGGCACgCGgc-CGGCguagaACgGCCGCAACu -3'
miRNA:   3'- -CUGUG-GCauaGUCGa----UGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 46462 0.67 0.957983
Target:  5'- --aGCCG-GUCGGCUggacACCGCCgGUGACg -3'
miRNA:   3'- cugUGGCaUAGUCGA----UGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 16394 0.67 0.964899
Target:  5'- aGACGCCGUuugcuacgCGGgUACCGCa-CGACg -3'
miRNA:   3'- -CUGUGGCAua------GUCgAUGGCGgcGUUG- -5'
29795 5' -54.2 NC_006273.1 + 129959 0.67 0.96804
Target:  5'- aGAC-CCGcGUCccuggGGCUGCUGCUGCAc- -3'
miRNA:   3'- -CUGuGGCaUAG-----UCGAUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 30663 0.67 0.961202
Target:  5'- cGCGCCGgg-CGGCUuccugcgGCCGgCCGCggUg -3'
miRNA:   3'- cUGUGGCauaGUCGA-------UGGC-GGCGuuG- -5'
29795 5' -54.2 NC_006273.1 + 68436 0.67 0.957983
Target:  5'- -uCACCGUGUUAGCgg--GCCaGCAGCu -3'
miRNA:   3'- cuGUGGCAUAGUCGauggCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 2387 0.67 0.961549
Target:  5'- uGGCGCUGgggcgcgaGUCGGCgcCCGCCGCc-- -3'
miRNA:   3'- -CUGUGGCa-------UAGUCGauGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 169954 0.67 0.964899
Target:  5'- uGCcuCCGUGUUuGCUACCGCUgagguccuuGCGGCg -3'
miRNA:   3'- cUGu-GGCAUAGuCGAUGGCGG---------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 166466 0.67 0.96804
Target:  5'- gGAUGCCGUGUaaCAGCgcaaaguauuCCGUCGcCAACg -3'
miRNA:   3'- -CUGUGGCAUA--GUCGau--------GGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 153289 0.67 0.954197
Target:  5'- --uGCCG---CAaCUACCGCCGCGGCa -3'
miRNA:   3'- cugUGGCauaGUcGAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 75097 0.67 0.954197
Target:  5'- cGGCcCCGUccacCAGCUccgucGCCGCCGCuACc -3'
miRNA:   3'- -CUGuGGCAua--GUCGA-----UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 214871 0.67 0.957983
Target:  5'- uGGCgACgGUcUCGGCacaaaGCCGCUGCGGCg -3'
miRNA:   3'- -CUG-UGgCAuAGUCGa----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 115111 0.67 0.96804
Target:  5'- --gGCCGcgAUCAGCgagGCCgaaGCCGcCAGCg -3'
miRNA:   3'- cugUGGCa-UAGUCGa--UGG---CGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 122116 0.67 0.961549
Target:  5'- aGCACCGg--CG--UAUCGCCGCGACu -3'
miRNA:   3'- cUGUGGCauaGUcgAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 197280 0.67 0.961549
Target:  5'- uGGCGCUGgggcgcgaGUCGGCgcCCGCCGCc-- -3'
miRNA:   3'- -CUGUGGCa-------UAGUCGauGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 91899 0.67 0.96804
Target:  5'- aGGCGCCGUAgcUCA-UUugCGCCGCc-- -3'
miRNA:   3'- -CUGUGGCAU--AGUcGAugGCGGCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.