miRNA display CGI


Results 81 - 100 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 71543 0.67 0.954197
Target:  5'- -uCGCCGg--CGGCcGCUGCCgGCGACu -3'
miRNA:   3'- cuGUGGCauaGUCGaUGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 90594 0.67 0.954197
Target:  5'- cGGCACCGgGUgugacugcaaCAGCgaggccacgGCCGCCGCGu- -3'
miRNA:   3'- -CUGUGGCaUA----------GUCGa--------UGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 122826 0.67 0.961549
Target:  5'- aGCACCGg--CGGCcGCUGaCGCGGCg -3'
miRNA:   3'- cUGUGGCauaGUCGaUGGCgGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 84422 0.67 0.962915
Target:  5'- aGACGCCGUcacgcaggugAggcucucggaucugCGGCUcaaacACCGCUGCGGCa -3'
miRNA:   3'- -CUGUGGCA----------Ua-------------GUCGA-----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 48962 0.67 0.964899
Target:  5'- uGGCuaguaCGUAaagucugCAGCUGCUGCgGCAACu -3'
miRNA:   3'- -CUGug---GCAUa------GUCGAUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 148839 0.67 0.96804
Target:  5'- cGGCgAUCGUcgCuggcuGUUGCCGCCGCuGCc -3'
miRNA:   3'- -CUG-UGGCAuaGu----CGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 35888 0.67 0.964899
Target:  5'- uGAUGCCGUG-CAGCgGCgGCCaGCAcaGCg -3'
miRNA:   3'- -CUGUGGCAUaGUCGaUGgCGG-CGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 197280 0.67 0.961549
Target:  5'- uGGCGCUGgggcgcgaGUCGGCgcCCGCCGCc-- -3'
miRNA:   3'- -CUGUGGCa-------UAGUCGauGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 122116 0.67 0.961549
Target:  5'- aGCACCGg--CG--UAUCGCCGCGACu -3'
miRNA:   3'- cUGUGGCauaGUcgAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 152950 0.67 0.961549
Target:  5'- cACuCCGUAgagCAGCUGCUugCGCAGCa -3'
miRNA:   3'- cUGuGGCAUa--GUCGAUGGcgGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 214871 0.67 0.957983
Target:  5'- uGGCgACgGUcUCGGCacaaaGCCGCUGCGGCg -3'
miRNA:   3'- -CUG-UGgCAuAGUCGa----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 75097 0.67 0.954197
Target:  5'- cGGCcCCGUccacCAGCUccgucGCCGCCGCuACc -3'
miRNA:   3'- -CUGuGGCAua--GUCGA-----UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 153289 0.67 0.954197
Target:  5'- --uGCCG---CAaCUACCGCCGCGGCa -3'
miRNA:   3'- cugUGGCauaGUcGAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 169954 0.67 0.964899
Target:  5'- uGCcuCCGUGUUuGCUACCGCUgagguccuuGCGGCg -3'
miRNA:   3'- cUGu-GGCAUAGuCGAUGGCGG---------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 109328 0.67 0.96804
Target:  5'- cGGCACgCGgc-CGGCguagaACgGCCGCAACu -3'
miRNA:   3'- -CUGUG-GCauaGUCGa----UGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 234629 0.67 0.96804
Target:  5'- aGCGCCGgacaCAGCa--CGCCGCAAa -3'
miRNA:   3'- cUGUGGCaua-GUCGaugGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 115111 0.67 0.96804
Target:  5'- --gGCCGcgAUCAGCgagGCCgaaGCCGcCAGCg -3'
miRNA:   3'- cugUGGCa-UAGUCGa--UGG---CGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 91899 0.67 0.96804
Target:  5'- aGGCGCCGUAgcUCA-UUugCGCCGCc-- -3'
miRNA:   3'- -CUGUGGCAU--AGUcGAugGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 202853 0.67 0.964899
Target:  5'- cGGCAaCGUgccAUCAgcGCUGuuGCCGUAACa -3'
miRNA:   3'- -CUGUgGCA---UAGU--CGAUggCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 16394 0.67 0.964899
Target:  5'- aGACGCCGUuugcuacgCGGgUACCGCa-CGACg -3'
miRNA:   3'- -CUGUGGCAua------GUCgAUGGCGgcGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.