miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 74557 0.71 0.813669
Target:  5'- -uCACCGa--CAGC-AUCGCCGCAGCa -3'
miRNA:   3'- cuGUGGCauaGUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 160114 0.71 0.813669
Target:  5'- -uCACCugGUAUgaGGCgGCCGCCGCGGCg -3'
miRNA:   3'- cuGUGG--CAUAg-UCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 233662 0.71 0.812804
Target:  5'- uGCGCUGUcggcccaGUC-GCcACCGCCGCGGCg -3'
miRNA:   3'- cUGUGGCA-------UAGuCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 136100 0.71 0.835561
Target:  5'- gGACGCCGUGggCGGCgaucgcgcuuuugACCGCgaGCGGCg -3'
miRNA:   3'- -CUGUGGCAUa-GUCGa------------UGGCGg-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 122633 0.71 0.838823
Target:  5'- aGCACCGag--AGCUGCUGuuGCGACg -3'
miRNA:   3'- cUGUGGCauagUCGAUGGCggCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 190745 0.71 0.846848
Target:  5'- aACGCCac--CAGCUGCCGCCG-AACg -3'
miRNA:   3'- cUGUGGcauaGUCGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 87600 0.71 0.846848
Target:  5'- cGACGCCGUccGUC-GCcGCUGuuGCGGCg -3'
miRNA:   3'- -CUGUGGCA--UAGuCGaUGGCggCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68863 0.71 0.846848
Target:  5'- cGAcCACCGUuacCAguaccaccGCUGCCGCCGCcACg -3'
miRNA:   3'- -CU-GUGGCAua-GU--------CGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 8420 0.71 0.854681
Target:  5'- uGGCGCCGUG-CAGUUGCCGCgCcCAAa -3'
miRNA:   3'- -CUGUGGCAUaGUCGAUGGCG-GcGUUg -5'
29795 5' -54.2 NC_006273.1 + 196259 0.71 0.813669
Target:  5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3'
miRNA:   3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 1366 0.71 0.813669
Target:  5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3'
miRNA:   3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 105909 0.71 0.838823
Target:  5'- cGACGCCucgcgcUCAcGCcGCCGCCGCGAUg -3'
miRNA:   3'- -CUGUGGcau---AGU-CGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 42267 0.71 0.822226
Target:  5'- cGACACCGccGUC-GUUACCGCCGgaGACc -3'
miRNA:   3'- -CUGUGGCa-UAGuCGAUGGCGGCg-UUG- -5'
29795 5' -54.2 NC_006273.1 + 168607 0.71 0.830614
Target:  5'- --gGCCaGUGUCAGC-GCCgaGCCGCGGCu -3'
miRNA:   3'- cugUGG-CAUAGUCGaUGG--CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 227732 0.71 0.830614
Target:  5'- --gGCCGacaaaUcgCAGCUgucuucGCCGCCGCAGCu -3'
miRNA:   3'- cugUGGC-----AuaGUCGA------UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 118635 0.71 0.822226
Target:  5'- aGAgGCCGgcgUAGCUGCCGCUGagaAACu -3'
miRNA:   3'- -CUgUGGCauaGUCGAUGGCGGCg--UUG- -5'
29795 5' -54.2 NC_006273.1 + 73759 0.7 0.890758
Target:  5'- aGGC-CCGg--CAGCggcGCCGCCaGCGGCg -3'
miRNA:   3'- -CUGuGGCauaGUCGa--UGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 22253 0.7 0.889419
Target:  5'- gGGCGCCGgcgagcgacgCGGCUccGCCGUCGguGCg -3'
miRNA:   3'- -CUGUGGCaua-------GUCGA--UGGCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 67119 0.7 0.876966
Target:  5'- uGACGCCGUcaGUCuGUUAUUGCaGCAACu -3'
miRNA:   3'- -CUGUGGCA--UAGuCGAUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 138037 0.7 0.876966
Target:  5'- cGGCGCCGgcgCcuGGUUGCUGCCGCGu- -3'
miRNA:   3'- -CUGUGGCauaG--UCGAUGGCGGCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.