Results 61 - 80 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29795 | 5' | -54.2 | NC_006273.1 | + | 85411 | 0.7 | 0.883281 |
Target: 5'- aGACGCCGUAgccgauaUCGGCcGCCaacGCCGUAucGCg -3' miRNA: 3'- -CUGUGGCAU-------AGUCGaUGG---CGGCGU--UG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 96472 | 0.7 | 0.883972 |
Target: 5'- -cCACCGUGUUc-CUGgUGCCGCGACg -3' miRNA: 3'- cuGUGGCAUAGucGAUgGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 119986 | 0.7 | 0.883972 |
Target: 5'- --uGCCGUA-CAGC-GCCGCCGCu-- -3' miRNA: 3'- cugUGGCAUaGUCGaUGGCGGCGuug -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 43579 | 0.7 | 0.890758 |
Target: 5'- aGCGCCGUA--GGCaAgUGCCGCGGCg -3' miRNA: 3'- cUGUGGCAUagUCGaUgGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 119304 | 0.7 | 0.890758 |
Target: 5'- cACGCCGUGcUUAGUcGCaagaCGCCGCAACc -3' miRNA: 3'- cUGUGGCAU-AGUCGaUG----GCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 153777 | 0.7 | 0.890758 |
Target: 5'- --gGCCGcuUCGGCcuCCGCCGCGGCc -3' miRNA: 3'- cugUGGCauAGUCGauGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 70935 | 0.7 | 0.890758 |
Target: 5'- cGACAUCGUcAUCgAGCgGCCGCgGCcGCa -3' miRNA: 3'- -CUGUGGCA-UAG-UCGaUGGCGgCGuUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 22253 | 0.7 | 0.889419 |
Target: 5'- gGGCGCCGgcgagcgacgCGGCUccGCCGUCGguGCg -3' miRNA: 3'- -CUGUGGCaua-------GUCGA--UGGCGGCguUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 138037 | 0.7 | 0.876966 |
Target: 5'- cGGCGCCGgcgCcuGGUUGCUGCCGCGu- -3' miRNA: 3'- -CUGUGGCauaG--UCGAUGGCGGCGUug -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 204013 | 0.7 | 0.883972 |
Target: 5'- cGAUGCCG---CAGCUcuucguccaGCCGCCGCAGa -3' miRNA: 3'- -CUGUGGCauaGUCGA---------UGGCGGCGUUg -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 67119 | 0.7 | 0.876966 |
Target: 5'- uGACGCCGUcaGUCuGUUAUUGCaGCAACu -3' miRNA: 3'- -CUGUGGCA--UAGuCGAUGGCGgCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 194834 | 0.7 | 0.869746 |
Target: 5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3' miRNA: 3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 136692 | 0.7 | 0.876966 |
Target: 5'- cGACgACCGgc-CGGUcGCCGCCGCcGCg -3' miRNA: 3'- -CUG-UGGCauaGUCGaUGGCGGCGuUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 185888 | 0.7 | 0.869746 |
Target: 5'- aACGCCGUuau-GCUcuACCGCgGCGACg -3' miRNA: 3'- cUGUGGCAuaguCGA--UGGCGgCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 73759 | 0.7 | 0.890758 |
Target: 5'- aGGC-CCGg--CAGCggcGCCGCCaGCGGCg -3' miRNA: 3'- -CUGuGGCauaGUCGa--UGGCGG-CGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 234772 | 0.7 | 0.869746 |
Target: 5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3' miRNA: 3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 130793 | 0.7 | 0.883281 |
Target: 5'- aGGCGCUGggcCAGCUgcaucguGCCGgCGCGACg -3' miRNA: 3'- -CUGUGGCauaGUCGA-------UGGCgGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 233534 | 0.7 | 0.890758 |
Target: 5'- cGGCAgCGUacgacguuccaGUCAGCgagGCCGUCGCGuugGCg -3' miRNA: 3'- -CUGUgGCA-----------UAGUCGa--UGGCGGCGU---UG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 118399 | 0.7 | 0.890758 |
Target: 5'- cGACG-CGUcgaCAGCagUGCUGCCGCAGCg -3' miRNA: 3'- -CUGUgGCAua-GUCG--AUGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 21849 | 0.7 | 0.890758 |
Target: 5'- cGGCGCUGggacuUUGGCUGCUgcggGCCGCGGCc -3' miRNA: 3'- -CUGUGGCau---AGUCGAUGG----CGGCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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