miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 147765 1.11 0.004826
Target:  5'- cGACACCGUAUCAGCUACCGCCGCAACa -3'
miRNA:   3'- -CUGUGGCAUAGUCGAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 140571 0.8 0.376337
Target:  5'- -cUACCGUcgucGUCGGCcgACCGCCGCGACc -3'
miRNA:   3'- cuGUGGCA----UAGUCGa-UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 171116 0.8 0.384522
Target:  5'- aGGCGCCauccgcuUCGGCcGCCGCCGCAACg -3'
miRNA:   3'- -CUGUGGcau----AGUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 131485 0.78 0.454064
Target:  5'- uACGCCGUggCGcGCaACCGCCGCGACu -3'
miRNA:   3'- cUGUGGCAuaGU-CGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 167025 0.78 0.454064
Target:  5'- uGCGCCGUGcUCAGCUGCuCGUCGCGu- -3'
miRNA:   3'- cUGUGGCAU-AGUCGAUG-GCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 72375 0.78 0.454064
Target:  5'- cGGCGCCcgcGUGUC--CUACCGCCGCAGCu -3'
miRNA:   3'- -CUGUGG---CAUAGucGAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 112560 0.78 0.463232
Target:  5'- -uCGCCGcGUCAGCgGCCGCCGguGCu -3'
miRNA:   3'- cuGUGGCaUAGUCGaUGGCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 214993 0.77 0.500826
Target:  5'- cGACGCCGcugcuguggCAGCgACCGUCGCAGCg -3'
miRNA:   3'- -CUGUGGCaua------GUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 73693 0.77 0.529881
Target:  5'- gGAgGCCGUGg-AGCgagUGCCGCCGCAGCc -3'
miRNA:   3'- -CUgUGGCAUagUCG---AUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 19983 0.76 0.54959
Target:  5'- cACGCCGUAUCAcccgaaCUGCCGUCGCGAa -3'
miRNA:   3'- cUGUGGCAUAGUc-----GAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 45395 0.76 0.579554
Target:  5'- --gGCCaGUAUCcGCUGCCGCCuGCAGCc -3'
miRNA:   3'- cugUGG-CAUAGuCGAUGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 132360 0.75 0.609849
Target:  5'- --aGCCGcggCcGCUGCCGCCGCGGCg -3'
miRNA:   3'- cugUGGCauaGuCGAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 80748 0.75 0.630139
Target:  5'- aACGCCGUcUCGucGUUGCCGCCGguGCu -3'
miRNA:   3'- cUGUGGCAuAGU--CGAUGGCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 64311 0.75 0.640291
Target:  5'- aGGCGCCcugggaAUCGGCgccccaACCGCCGCGACu -3'
miRNA:   3'- -CUGUGGca----UAGUCGa-----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 156047 0.75 0.640291
Target:  5'- uGAUGCCGUGUCuGCccAUCGCCGcCAGCa -3'
miRNA:   3'- -CUGUGGCAUAGuCGa-UGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 39454 0.75 0.650435
Target:  5'- gGACGCCGUGgccCGGCgucGCCGUaggCGCAGCa -3'
miRNA:   3'- -CUGUGGCAUa--GUCGa--UGGCG---GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 234347 0.75 0.650435
Target:  5'- gGACGCCGUGgccCGGCgucGCCGUaggCGCAGCa -3'
miRNA:   3'- -CUGUGGCAUa--GUCGa--UGGCG---GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 38316 0.74 0.670674
Target:  5'- cGGCGCCGccgCuGCUGCCGCUGCcGCc -3'
miRNA:   3'- -CUGUGGCauaGuCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 233209 0.74 0.670674
Target:  5'- cGGCGCCGccgCuGCUGCCGCUGCcGCc -3'
miRNA:   3'- -CUGUGGCauaGuCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 183784 0.74 0.670674
Target:  5'- cGC-CCGUGUCGgaagaagaccccGCUGCCGCCGCcACc -3'
miRNA:   3'- cUGuGGCAUAGU------------CGAUGGCGGCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.