miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 32290 0.74 0.680751
Target:  5'- cGGgACCGUcaccGUC-GCgACCGCCGCGACa -3'
miRNA:   3'- -CUgUGGCA----UAGuCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68064 0.74 0.680751
Target:  5'- -cCGCCGUGgccgCcGCUGCCGCCGCu-- -3'
miRNA:   3'- cuGUGGCAUa---GuCGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 124152 0.73 0.710712
Target:  5'- -cCGCUGUGUCGGCUGCUauuGCUGcCAACg -3'
miRNA:   3'- cuGUGGCAUAGUCGAUGG---CGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 159934 0.73 0.730372
Target:  5'- --uGCCGgcgaCGGCU-CCGCCGCAGCu -3'
miRNA:   3'- cugUGGCaua-GUCGAuGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 202085 0.73 0.740081
Target:  5'- gGACGCCGagcugagCAaccacgccaaccGCUGCCGCCGCAAg -3'
miRNA:   3'- -CUGUGGCaua----GU------------CGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 196215 0.73 0.740081
Target:  5'- aACGCCGc-UCGGagcACCGCCGCAGCc -3'
miRNA:   3'- cUGUGGCauAGUCga-UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 213082 0.73 0.749697
Target:  5'- uGGCGCCGcugccgcGUCGGgUACCGCUGCcGCa -3'
miRNA:   3'- -CUGUGGCa------UAGUCgAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 130205 0.73 0.759212
Target:  5'- -cCGCCGUcucCGGCUACCugggcgagGCCGCGGCg -3'
miRNA:   3'- cuGUGGCAua-GUCGAUGG--------CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 161635 0.72 0.767681
Target:  5'- cGGCGCCGcUGccgggccUCGGCcGCCGCCGCcACc -3'
miRNA:   3'- -CUGUGGC-AU-------AGUCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 233468 0.72 0.768617
Target:  5'- aGCACCGcgccCAGCgccaGCCaGCCGCAGCa -3'
miRNA:   3'- cUGUGGCaua-GUCGa---UGG-CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 38575 0.72 0.768617
Target:  5'- aGCACCGcgccCAGCgccaGCCaGCCGCAGCa -3'
miRNA:   3'- cUGUGGCaua-GUCGa---UGG-CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 103025 0.72 0.777901
Target:  5'- aACGCCGcggCGGCaGCgGCCGCGGCu -3'
miRNA:   3'- cUGUGGCauaGUCGaUGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 2292 0.72 0.777901
Target:  5'- gGGCGCCGUGuUCGGgUACUGcCCGCugGACg -3'
miRNA:   3'- -CUGUGGCAU-AGUCgAUGGC-GGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 197185 0.72 0.777901
Target:  5'- gGGCGCCGUGuUCGGgUACUGcCCGCugGACg -3'
miRNA:   3'- -CUGUGGCAU-AGUCgAUGGC-GGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 155420 0.72 0.787057
Target:  5'- aACGCCGcUAUCAucuCUACCGCCGCcguGCc -3'
miRNA:   3'- cUGUGGC-AUAGUc--GAUGGCGGCGu--UG- -5'
29795 5' -54.2 NC_006273.1 + 163499 0.72 0.796076
Target:  5'- -uCGCCgGUGUCGcgcccGUUGCCGCCGCAGu -3'
miRNA:   3'- cuGUGG-CAUAGU-----CGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 132495 0.72 0.80495
Target:  5'- -uCGCCGUGU--GUUACCGCCGCcGCc -3'
miRNA:   3'- cuGUGGCAUAguCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 45256 0.72 0.80495
Target:  5'- cGC-CCGg--CGGCUGCucgCGCCGCAACa -3'
miRNA:   3'- cUGuGGCauaGUCGAUG---GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 233662 0.71 0.812804
Target:  5'- uGCGCUGUcggcccaGUC-GCcACCGCCGCGGCg -3'
miRNA:   3'- cUGUGGCA-------UAGuCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 196259 0.71 0.813669
Target:  5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3'
miRNA:   3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.