Results 41 - 60 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29795 | 5' | -54.2 | NC_006273.1 | + | 196259 | 0.71 | 0.813669 |
Target: 5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3' miRNA: 3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 1366 | 0.71 | 0.813669 |
Target: 5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3' miRNA: 3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 74557 | 0.71 | 0.813669 |
Target: 5'- -uCACCGa--CAGC-AUCGCCGCAGCa -3' miRNA: 3'- cuGUGGCauaGUCGaUGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 42267 | 0.71 | 0.822226 |
Target: 5'- cGACACCGccGUC-GUUACCGCCGgaGACc -3' miRNA: 3'- -CUGUGGCa-UAGuCGAUGGCGGCg-UUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 118635 | 0.71 | 0.822226 |
Target: 5'- aGAgGCCGgcgUAGCUGCCGCUGagaAACu -3' miRNA: 3'- -CUgUGGCauaGUCGAUGGCGGCg--UUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 227732 | 0.71 | 0.830614 |
Target: 5'- --gGCCGacaaaUcgCAGCUgucuucGCCGCCGCAGCu -3' miRNA: 3'- cugUGGC-----AuaGUCGA------UGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 168607 | 0.71 | 0.830614 |
Target: 5'- --gGCCaGUGUCAGC-GCCgaGCCGCGGCu -3' miRNA: 3'- cugUGG-CAUAGUCGaUGG--CGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 136100 | 0.71 | 0.835561 |
Target: 5'- gGACGCCGUGggCGGCgaucgcgcuuuugACCGCgaGCGGCg -3' miRNA: 3'- -CUGUGGCAUa-GUCGa------------UGGCGg-CGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 38343 | 0.71 | 0.838823 |
Target: 5'- -cCACCGUcGUCGccGCUGCCGCuCGuCAGCu -3' miRNA: 3'- cuGUGGCA-UAGU--CGAUGGCG-GC-GUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 122633 | 0.71 | 0.838823 |
Target: 5'- aGCACCGag--AGCUGCUGuuGCGACg -3' miRNA: 3'- cUGUGGCauagUCGAUGGCggCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 105909 | 0.71 | 0.838823 |
Target: 5'- cGACGCCucgcgcUCAcGCcGCCGCCGCGAUg -3' miRNA: 3'- -CUGUGGcau---AGU-CGaUGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 190745 | 0.71 | 0.846848 |
Target: 5'- aACGCCac--CAGCUGCCGCCG-AACg -3' miRNA: 3'- cUGUGGcauaGUCGAUGGCGGCgUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 68863 | 0.71 | 0.846848 |
Target: 5'- cGAcCACCGUuacCAguaccaccGCUGCCGCCGCcACg -3' miRNA: 3'- -CU-GUGGCAua-GU--------CGAUGGCGGCGuUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 87600 | 0.71 | 0.846848 |
Target: 5'- cGACGCCGUccGUC-GCcGCUGuuGCGGCg -3' miRNA: 3'- -CUGUGGCA--UAGuCGaUGGCggCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 216973 | 0.71 | 0.854681 |
Target: 5'- --gGCCGUcUUGGCcACgGCCGCAGCg -3' miRNA: 3'- cugUGGCAuAGUCGaUGgCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 8420 | 0.71 | 0.854681 |
Target: 5'- uGGCGCCGUG-CAGUUGCCGCgCcCAAa -3' miRNA: 3'- -CUGUGGCAUaGUCGAUGGCG-GcGUUg -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 91062 | 0.7 | 0.869746 |
Target: 5'- gGACGCC-UGaCAGCccACCGCCGCGcACa -3' miRNA: 3'- -CUGUGGcAUaGUCGa-UGGCGGCGU-UG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 192160 | 0.7 | 0.869746 |
Target: 5'- aGCGCCGUAgcCGGCccgccUGCCGaUCGCGACg -3' miRNA: 3'- cUGUGGCAUa-GUCG-----AUGGC-GGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 185888 | 0.7 | 0.869746 |
Target: 5'- aACGCCGUuau-GCUcuACCGCgGCGACg -3' miRNA: 3'- cUGUGGCAuaguCGA--UGGCGgCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 194834 | 0.7 | 0.869746 |
Target: 5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3' miRNA: 3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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