miRNA display CGI


Results 61 - 80 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 234772 0.7 0.869746
Target:  5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3'
miRNA:   3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 136692 0.7 0.876966
Target:  5'- cGACgACCGgc-CGGUcGCCGCCGCcGCg -3'
miRNA:   3'- -CUG-UGGCauaGUCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 138037 0.7 0.876966
Target:  5'- cGGCGCCGgcgCcuGGUUGCUGCCGCGu- -3'
miRNA:   3'- -CUGUGGCauaG--UCGAUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 67119 0.7 0.876966
Target:  5'- uGACGCCGUcaGUCuGUUAUUGCaGCAACu -3'
miRNA:   3'- -CUGUGGCA--UAGuCGAUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 130793 0.7 0.883281
Target:  5'- aGGCGCUGggcCAGCUgcaucguGCCGgCGCGACg -3'
miRNA:   3'- -CUGUGGCauaGUCGA-------UGGCgGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 85411 0.7 0.883281
Target:  5'- aGACGCCGUAgccgauaUCGGCcGCCaacGCCGUAucGCg -3'
miRNA:   3'- -CUGUGGCAU-------AGUCGaUGG---CGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 204013 0.7 0.883972
Target:  5'- cGAUGCCG---CAGCUcuucguccaGCCGCCGCAGa -3'
miRNA:   3'- -CUGUGGCauaGUCGA---------UGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 96472 0.7 0.883972
Target:  5'- -cCACCGUGUUc-CUGgUGCCGCGACg -3'
miRNA:   3'- cuGUGGCAUAGucGAUgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 119986 0.7 0.883972
Target:  5'- --uGCCGUA-CAGC-GCCGCCGCu-- -3'
miRNA:   3'- cugUGGCAUaGUCGaUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 22253 0.7 0.889419
Target:  5'- gGGCGCCGgcgagcgacgCGGCUccGCCGUCGguGCg -3'
miRNA:   3'- -CUGUGGCaua-------GUCGA--UGGCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 73759 0.7 0.890758
Target:  5'- aGGC-CCGg--CAGCggcGCCGCCaGCGGCg -3'
miRNA:   3'- -CUGuGGCauaGUCGa--UGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 70935 0.7 0.890758
Target:  5'- cGACAUCGUcAUCgAGCgGCCGCgGCcGCa -3'
miRNA:   3'- -CUGUGGCA-UAG-UCGaUGGCGgCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 153777 0.7 0.890758
Target:  5'- --gGCCGcuUCGGCcuCCGCCGCGGCc -3'
miRNA:   3'- cugUGGCauAGUCGauGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 163585 0.7 0.890758
Target:  5'- aACcCCGuUGUC-GCcACCGCCGCGGCu -3'
miRNA:   3'- cUGuGGC-AUAGuCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 30014 0.7 0.890758
Target:  5'- aGGCACCGcgaCAGCUACCGaggCGCuguACa -3'
miRNA:   3'- -CUGUGGCauaGUCGAUGGCg--GCGu--UG- -5'
29795 5' -54.2 NC_006273.1 + 119304 0.7 0.890758
Target:  5'- cACGCCGUGcUUAGUcGCaagaCGCCGCAACc -3'
miRNA:   3'- cUGUGGCAU-AGUCGaUG----GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 43579 0.7 0.890758
Target:  5'- aGCGCCGUA--GGCaAgUGCCGCGGCg -3'
miRNA:   3'- cUGUGGCAUagUCGaUgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 118399 0.7 0.890758
Target:  5'- cGACG-CGUcgaCAGCagUGCUGCCGCAGCg -3'
miRNA:   3'- -CUGUgGCAua-GUCG--AUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 21849 0.7 0.890758
Target:  5'- cGGCGCUGggacuUUGGCUGCUgcggGCCGCGGCc -3'
miRNA:   3'- -CUGUGGCau---AGUCGAUGG----CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 233534 0.7 0.890758
Target:  5'- cGGCAgCGUacgacguuccaGUCAGCgagGCCGUCGCGuugGCg -3'
miRNA:   3'- -CUGUgGCA-----------UAGUCGa--UGGCGGCGU---UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.