miRNA display CGI


Results 81 - 100 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 83357 0.7 0.892751
Target:  5'- cGGCGCCGUGgugggaggacccgCGggccacgucgggcuGCUGCCGCCGCcACc -3'
miRNA:   3'- -CUGUGGCAUa------------GU--------------CGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 63822 0.69 0.897321
Target:  5'- -cCACCGg--CAGCgGCaCGCCGCGAg -3'
miRNA:   3'- cuGUGGCauaGUCGaUG-GCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 122965 0.69 0.897321
Target:  5'- cGACACgGUGguuguagCAGCguCCGCgGCGACg -3'
miRNA:   3'- -CUGUGgCAUa------GUCGauGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 1276 0.69 0.903656
Target:  5'- cGACGCgGg--CAcGCUGCUGCCGCucgGACg -3'
miRNA:   3'- -CUGUGgCauaGU-CGAUGGCGGCG---UUG- -5'
29795 5' -54.2 NC_006273.1 + 212413 0.69 0.903656
Target:  5'- -cCGCCGUGuuucUCGGCgUACUGCUGCAc- -3'
miRNA:   3'- cuGUGGCAU----AGUCG-AUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 49654 0.69 0.903656
Target:  5'- -uCAUCGUAgCAGUagaUGCCGCCGCGc- -3'
miRNA:   3'- cuGUGGCAUaGUCG---AUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 132141 0.69 0.903656
Target:  5'- uGCAgaGUAUCAGCgguaCGCCGCAcACg -3'
miRNA:   3'- cUGUggCAUAGUCGaug-GCGGCGU-UG- -5'
29795 5' -54.2 NC_006273.1 + 196169 0.69 0.903656
Target:  5'- cGACGCgGg--CAcGCUGCUGCCGCucgGACg -3'
miRNA:   3'- -CUGUGgCauaGU-CGAUGGCGGCG---UUG- -5'
29795 5' -54.2 NC_006273.1 + 181455 0.69 0.903656
Target:  5'- uGACGCucgaCGUGUacuGCUGCCGCCagaccuccaGCAACa -3'
miRNA:   3'- -CUGUG----GCAUAgu-CGAUGGCGG---------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 196502 0.69 0.909761
Target:  5'- gGGCGagGUGgugCGGCUguACCGCUGCAACc -3'
miRNA:   3'- -CUGUggCAUa--GUCGA--UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 197206 0.69 0.909761
Target:  5'- cGGCGCgGgcUCGGCgucCCGCCGUccgaGACg -3'
miRNA:   3'- -CUGUGgCauAGUCGau-GGCGGCG----UUG- -5'
29795 5' -54.2 NC_006273.1 + 1609 0.69 0.909761
Target:  5'- gGGCGagGUGgugCGGCUguACCGCUGCAACc -3'
miRNA:   3'- -CUGUggCAUa--GUCGA--UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 163393 0.69 0.915635
Target:  5'- aGCAgCGUcgCGaggACCGCCGCAGCu -3'
miRNA:   3'- cUGUgGCAuaGUcgaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 188093 0.69 0.915635
Target:  5'- -cCACCGUGUCgaagcgacAGCcGCUGCCGUAGu -3'
miRNA:   3'- cuGUGGCAUAG--------UCGaUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 7699 0.69 0.915635
Target:  5'- cGGCGgCGg--CAGUgGCCGCgGCAGCg -3'
miRNA:   3'- -CUGUgGCauaGUCGaUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 123481 0.69 0.921274
Target:  5'- aACGCCGUGUgaugcgCGGCUuuaCGUCGUAGCg -3'
miRNA:   3'- cUGUGGCAUA------GUCGAug-GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 197655 0.69 0.921274
Target:  5'- aGACGCUGcGUCGGUUucuaCGCgGCGACa -3'
miRNA:   3'- -CUGUGGCaUAGUCGAug--GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 100884 0.69 0.921274
Target:  5'- cGACGCCacggcGUGUCcuuGCUACCGaCUGCAc- -3'
miRNA:   3'- -CUGUGG-----CAUAGu--CGAUGGC-GGCGUug -5'
29795 5' -54.2 NC_006273.1 + 70910 0.69 0.926679
Target:  5'- cGCACgaGU-UCAGCaGCCGCCGCGc- -3'
miRNA:   3'- cUGUGg-CAuAGUCGaUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 95139 0.69 0.926679
Target:  5'- cGGCAaaGgcUCAGCcGCgGCCGCGAa -3'
miRNA:   3'- -CUGUggCauAGUCGaUGgCGGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.