miRNA display CGI


Results 21 - 40 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 100177 0.66 0.980587
Target:  5'- gGGCGCCuaggAUCAGgUccgagacAgCGCCGCAGCg -3'
miRNA:   3'- -CUGUGGca--UAGUCgA-------UgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 23356 0.66 0.980375
Target:  5'- aGCgACUGUGUCAGCggcugcgcauucGCCuGCCGCAu- -3'
miRNA:   3'- cUG-UGGCAUAGUCGa-----------UGG-CGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 125980 0.66 0.980161
Target:  5'- uGCACCGUGgcggCGGCauugcgcucggacaUGCUGCCG-AACg -3'
miRNA:   3'- cUGUGGCAUa---GUCG--------------AUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 68356 0.66 0.980161
Target:  5'- --gGCCGUG-CAGCUGCaaaucagcgccucgUGCgGCAACg -3'
miRNA:   3'- cugUGGCAUaGUCGAUG--------------GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 176516 0.66 0.978616
Target:  5'- cGACAgCGUGUgc-CUGCCGCCGUg-- -3'
miRNA:   3'- -CUGUgGCAUAgucGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 140419 0.66 0.978616
Target:  5'- -cCGCCGaga-GGgaGCCGCCGCGAg -3'
miRNA:   3'- cuGUGGCauagUCgaUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 103525 0.66 0.978616
Target:  5'- --uGCCGUcgauGCgGCCGCCGUAGCc -3'
miRNA:   3'- cugUGGCAuaguCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 40846 0.66 0.978616
Target:  5'- aACAgCGUggCGGgUACCGUCGaCGGCg -3'
miRNA:   3'- cUGUgGCAuaGUCgAUGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 163663 0.66 0.978616
Target:  5'- -cCGCUGUGUCAgGCUGCgCGCUGguuaAACa -3'
miRNA:   3'- cuGUGGCAUAGU-CGAUG-GCGGCg---UUG- -5'
29795 5' -54.2 NC_006273.1 + 204734 0.66 0.978616
Target:  5'- cGCugCGaucugCGGUUGCCGaCGCGACg -3'
miRNA:   3'- cUGugGCaua--GUCGAUGGCgGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 14340 0.66 0.978616
Target:  5'- uGACGgCGcugCAGUugUGCCGCCGgAGCu -3'
miRNA:   3'- -CUGUgGCauaGUCG--AUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 156871 0.66 0.978616
Target:  5'- cGGCGCCcgGUGUCcgGGCgg-CGCCGCAGg -3'
miRNA:   3'- -CUGUGG--CAUAG--UCGaugGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 177243 0.66 0.978616
Target:  5'- -cCACCGUGgugCGGagGCCGCUGCGc- -3'
miRNA:   3'- cuGUGGCAUa--GUCgaUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 142780 0.66 0.976256
Target:  5'- cGCGCCGcUGgcgagcaaCAGCaGCCGCCGUcGCu -3'
miRNA:   3'- cUGUGGC-AUa-------GUCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 215712 0.66 0.976256
Target:  5'- aACGCCGg--CGGUUAUCGCCGaGAUu -3'
miRNA:   3'- cUGUGGCauaGUCGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 31607 0.66 0.976256
Target:  5'- -cCGCCGgcacGUCAGUUucgcuuuCCGCCGCuuAACa -3'
miRNA:   3'- cuGUGGCa---UAGUCGAu------GGCGGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 90287 0.66 0.976256
Target:  5'- uGCcCCGcagguggugAUCAGC-GCCGCCGcCAGCg -3'
miRNA:   3'- cUGuGGCa--------UAGUCGaUGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 17192 0.66 0.976256
Target:  5'- -cCGCCG--UCGGCcGCCGCCcaugccacGCGACg -3'
miRNA:   3'- cuGUGGCauAGUCGaUGGCGG--------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 218739 0.66 0.976256
Target:  5'- cGGCGCCcag-CAGgUACCaGCgGCAACg -3'
miRNA:   3'- -CUGUGGcauaGUCgAUGG-CGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 198712 0.66 0.97601
Target:  5'- aACACCauaggucgugugaGUcGUCGGCUAcCCGCCGCcaGGCc -3'
miRNA:   3'- cUGUGG-------------CA-UAGUCGAU-GGCGGCG--UUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.