miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 227350 0.66 0.975513
Target:  5'- --aGCUGUGUCuucggcgcauguugGGuCUGCCGCCGCcACc -3'
miRNA:   3'- cugUGGCAUAG--------------UC-GAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 179242 0.66 0.973712
Target:  5'- cGACcuCCGcGUCGGUcGCCGCCuccGCGGCc -3'
miRNA:   3'- -CUGu-GGCaUAGUCGaUGGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 39973 0.66 0.973712
Target:  5'- cACACgGUGuuUCGGCagaugcacGCCGCCGgAGCa -3'
miRNA:   3'- cUGUGgCAU--AGUCGa-------UGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 174153 0.66 0.973712
Target:  5'- gGGC-CCGcAUCuGCUgcACCGCCGCcucgaGACg -3'
miRNA:   3'- -CUGuGGCaUAGuCGA--UGGCGGCG-----UUG- -5'
29795 5' -54.2 NC_006273.1 + 46265 0.66 0.973712
Target:  5'- cGACACgGUAcugcaUCAGCcGCCGCCa---- -3'
miRNA:   3'- -CUGUGgCAU-----AGUCGaUGGCGGcguug -5'
29795 5' -54.2 NC_006273.1 + 198045 0.66 0.973712
Target:  5'- gGGCcCCGgcccaccUCcGCUGCCGCCaaaGCAACg -3'
miRNA:   3'- -CUGuGGCau-----AGuCGAUGGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 202037 0.66 0.973712
Target:  5'- cGCGCCGcaggAUCGcacGCgGCUGCCGCAGu -3'
miRNA:   3'- cUGUGGCa---UAGU---CGaUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 222808 0.66 0.973712
Target:  5'- aGACGCCuuugagGUucUCGGCcugGCCGCagaGCAGCa -3'
miRNA:   3'- -CUGUGG------CAu-AGUCGa--UGGCGg--CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 70672 0.66 0.973712
Target:  5'- cGACACgGUggCGGCgguggaggGCgCGCgGCAACu -3'
miRNA:   3'- -CUGUGgCAuaGUCGa-------UG-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 196971 0.66 0.973712
Target:  5'- -uCGCuCGUcgCuGUUGCCGCCaccGCAGCg -3'
miRNA:   3'- cuGUG-GCAuaGuCGAUGGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 209955 0.66 0.973712
Target:  5'- cGGCGCCauagGUGUgCAGCgccaCGCgGCAACa -3'
miRNA:   3'- -CUGUGG----CAUA-GUCGaug-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 202707 0.66 0.973447
Target:  5'- aGACugCGUcaCGGCaACCGCUcgggccuGCGACg -3'
miRNA:   3'- -CUGugGCAuaGUCGaUGGCGG-------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 200370 0.66 0.970975
Target:  5'- --aGCCGcUGUCuGGCUuuACCGCCGUcGCu -3'
miRNA:   3'- cugUGGC-AUAG-UCGA--UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 45589 0.66 0.970975
Target:  5'- --uGCCGUGcaggCGGCcAUgGCCGCGGCu -3'
miRNA:   3'- cugUGGCAUa---GUCGaUGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68267 0.66 0.970975
Target:  5'- aACGCUGcuagAUCAGCagGCCGaCGCGGCc -3'
miRNA:   3'- cUGUGGCa---UAGUCGa-UGGCgGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 71102 0.66 0.970975
Target:  5'- uGugGCCGUGgcaccCGGC-GCCGCCaGCAc- -3'
miRNA:   3'- -CugUGGCAUa----GUCGaUGGCGG-CGUug -5'
29795 5' -54.2 NC_006273.1 + 117910 0.66 0.970975
Target:  5'- aACGCCGUAa-GGaaACCGCgGCGGCg -3'
miRNA:   3'- cUGUGGCAUagUCgaUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 176170 0.66 0.970975
Target:  5'- uGCGCCuUGUCGuuUACUuuGCCGCAGCg -3'
miRNA:   3'- cUGUGGcAUAGUcgAUGG--CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 31738 0.66 0.970975
Target:  5'- aGugGCuCGgGUCGGCUggucggGCCGUCGCGGa -3'
miRNA:   3'- -CugUG-GCaUAGUCGA------UGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 135104 0.66 0.970975
Target:  5'- cGugGCCGUcUC-GCUacGCCGUCGCGc- -3'
miRNA:   3'- -CugUGGCAuAGuCGA--UGGCGGCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.