miRNA display CGI


Results 81 - 100 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 195536 0.67 0.961549
Target:  5'- cACAgCGUGacuuugagCGGCUcGCCGCCGCGccACa -3'
miRNA:   3'- cUGUgGCAUa-------GUCGA-UGGCGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 25449 0.67 0.961549
Target:  5'- uGGCGCCGUGgguuggCAGCUgGCCGgcuugaCCGCGu- -3'
miRNA:   3'- -CUGUGGCAUa-----GUCGA-UGGC------GGCGUug -5'
29795 5' -54.2 NC_006273.1 + 197280 0.67 0.961549
Target:  5'- uGGCGCUGgggcgcgaGUCGGCgcCCGCCGCc-- -3'
miRNA:   3'- -CUGUGGCa-------UAGUCGauGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 122116 0.67 0.961549
Target:  5'- aGCACCGg--CG--UAUCGCCGCGACu -3'
miRNA:   3'- cUGUGGCauaGUcgAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 152950 0.67 0.961549
Target:  5'- cACuCCGUAgagCAGCUGCUugCGCAGCa -3'
miRNA:   3'- cUGuGGCAUa--GUCGAUGGcgGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 30663 0.67 0.961202
Target:  5'- cGCGCCGgg-CGGCUuccugcgGCCGgCCGCggUg -3'
miRNA:   3'- cUGUGGCauaGUCGA-------UGGC-GGCGuuG- -5'
29795 5' -54.2 NC_006273.1 + 70327 0.67 0.957983
Target:  5'- cGCGCCGUgcgucugcccGUgAGC-ACCGCUGCcGCg -3'
miRNA:   3'- cUGUGGCA----------UAgUCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 102583 0.67 0.957983
Target:  5'- uGGgGCCGgu---GCUGCCGCCGUcguuGACg -3'
miRNA:   3'- -CUgUGGCauaguCGAUGGCGGCG----UUG- -5'
29795 5' -54.2 NC_006273.1 + 68436 0.67 0.957983
Target:  5'- -uCACCGUGUUAGCgg--GCCaGCAGCu -3'
miRNA:   3'- cuGUGGCAUAGUCGauggCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 46462 0.67 0.957983
Target:  5'- --aGCCG-GUCGGCUggacACCGCCgGUGACg -3'
miRNA:   3'- cugUGGCaUAGUCGA----UGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 162588 0.67 0.957983
Target:  5'- uGCGCCGUcugCGGCUcuacCCGCCcgaGCGGCu -3'
miRNA:   3'- cUGUGGCAua-GUCGAu---GGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 214871 0.67 0.957983
Target:  5'- uGGCgACgGUcUCGGCacaaaGCCGCUGCGGCg -3'
miRNA:   3'- -CUG-UGgCAuAGUCGa----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 147638 0.67 0.954197
Target:  5'- aACGCCGcgaCAaCgGCCGCCGCAGCc -3'
miRNA:   3'- cUGUGGCauaGUcGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 111249 0.67 0.954197
Target:  5'- cGACACag---CGGCaaaUGCCGCCGcCAACg -3'
miRNA:   3'- -CUGUGgcauaGUCG---AUGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 157712 0.67 0.954197
Target:  5'- uGACGCUGUAgucuUCGcGC-GCCGCCGUgAGCa -3'
miRNA:   3'- -CUGUGGCAU----AGU-CGaUGGCGGCG-UUG- -5'
29795 5' -54.2 NC_006273.1 + 96668 0.67 0.954197
Target:  5'- gGACAaCGUgAUCAGCaucgACCaCCGCGGCg -3'
miRNA:   3'- -CUGUgGCA-UAGUCGa---UGGcGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 75097 0.67 0.954197
Target:  5'- cGGCcCCGUccacCAGCUccgucGCCGCCGCuACc -3'
miRNA:   3'- -CUGuGGCAua--GUCGA-----UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 71543 0.67 0.954197
Target:  5'- -uCGCCGg--CGGCcGCUGCCgGCGACu -3'
miRNA:   3'- cuGUGGCauaGUCGaUGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 177015 0.67 0.954197
Target:  5'- --aAUUGUAUCGGUUGCCGCgGCu-- -3'
miRNA:   3'- cugUGGCAUAGUCGAUGGCGgCGuug -5'
29795 5' -54.2 NC_006273.1 + 153289 0.67 0.954197
Target:  5'- --uGCCG---CAaCUACCGCCGCGGCa -3'
miRNA:   3'- cugUGGCauaGUcGAUGGCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.