miRNA display CGI


Results 101 - 120 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 153289 0.67 0.954197
Target:  5'- --uGCCG---CAaCUACCGCCGCGGCa -3'
miRNA:   3'- cugUGGCauaGUcGAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 111874 0.68 0.950187
Target:  5'- cACGCCGcugcugaaaCGGCUACCGCUaCGACg -3'
miRNA:   3'- cUGUGGCaua------GUCGAUGGCGGcGUUG- -5'
29795 5' -54.2 NC_006273.1 + 21226 0.68 0.950187
Target:  5'- -cCGCCGcugUGGCUGCCGCUGCu-- -3'
miRNA:   3'- cuGUGGCauaGUCGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 162913 0.68 0.950187
Target:  5'- aACGCCGUGaCGGaCgugGCCGCCGgcacCGACg -3'
miRNA:   3'- cUGUGGCAUaGUC-Ga--UGGCGGC----GUUG- -5'
29795 5' -54.2 NC_006273.1 + 220386 0.68 0.950187
Target:  5'- uGCACCGUuuucAUCAGCcGCauaaucaccgUGCCGUAACc -3'
miRNA:   3'- cUGUGGCA----UAGUCGaUG----------GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 180052 0.68 0.950187
Target:  5'- cGGCGCCGUcuUCGGCgugcaucCCGauaCGCGGCa -3'
miRNA:   3'- -CUGUGGCAu-AGUCGau-----GGCg--GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 93198 0.68 0.949774
Target:  5'- cACGCUGUccgagggGUC-GCUGCCGCCGguGa -3'
miRNA:   3'- cUGUGGCA-------UAGuCGAUGGCGGCguUg -5'
29795 5' -54.2 NC_006273.1 + 44803 0.68 0.949358
Target:  5'- gGGCGCCGgcggacgugacUCGGCaGCCGCUGUAGa -3'
miRNA:   3'- -CUGUGGCau---------AGUCGaUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 78136 0.68 0.949358
Target:  5'- uGACACUGUAcggcagaaaagcCGGCUccaagugcaagcGCCGCgGCAGCa -3'
miRNA:   3'- -CUGUGGCAUa-----------GUCGA------------UGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 186316 0.68 0.94595
Target:  5'- -cCACCGUuUCAGCgGCCGgCGUGAg -3'
miRNA:   3'- cuGUGGCAuAGUCGaUGGCgGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 64102 0.68 0.94595
Target:  5'- uGGCGCCGUc---GUUACCGCggUGCAACg -3'
miRNA:   3'- -CUGUGGCAuaguCGAUGGCG--GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 591 0.68 0.94595
Target:  5'- uGGCGCCGca--AGCgcuCCGCCGCuucuGCg -3'
miRNA:   3'- -CUGUGGCauagUCGau-GGCGGCGu---UG- -5'
29795 5' -54.2 NC_006273.1 + 150775 0.68 0.94595
Target:  5'- gGGCGCUGUGgugCAGCaGCCGgCCGaAGCu -3'
miRNA:   3'- -CUGUGGCAUa--GUCGaUGGC-GGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 72604 0.68 0.94595
Target:  5'- cGACAUgCGg--CcGCUGCCGCCGCcACc -3'
miRNA:   3'- -CUGUG-GCauaGuCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 40529 0.68 0.94595
Target:  5'- uGGCGCCGca--AGCgcuCCGCCGCuucuGCg -3'
miRNA:   3'- -CUGUGGCauagUCGau-GGCGGCGu---UG- -5'
29795 5' -54.2 NC_006273.1 + 118387 0.68 0.94595
Target:  5'- cGGCuagugUCGUGUUAGCcGCCGCUGCuGCc -3'
miRNA:   3'- -CUGu----GGCAUAGUCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 118784 0.68 0.941482
Target:  5'- --gACCGUcgCGgacGCUcugcAUCGCCGCAACg -3'
miRNA:   3'- cugUGGCAuaGU---CGA----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 215419 0.68 0.941482
Target:  5'- uGACGCCGUGaCAGCca-CGCUgguaaGCAACg -3'
miRNA:   3'- -CUGUGGCAUaGUCGaugGCGG-----CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 126696 0.68 0.941482
Target:  5'- aGGCGCCGUcacgacgCAGCaGCCGuuGUAAa -3'
miRNA:   3'- -CUGUGGCAua-----GUCGaUGGCggCGUUg -5'
29795 5' -54.2 NC_006273.1 + 101877 0.68 0.941482
Target:  5'- -uCAgCGUAgUCGGCUaacaaagcccggGCCGCCGcCAGCg -3'
miRNA:   3'- cuGUgGCAU-AGUCGA------------UGGCGGC-GUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.