miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 591 0.68 0.94595
Target:  5'- uGGCGCCGca--AGCgcuCCGCCGCuucuGCg -3'
miRNA:   3'- -CUGUGGCauagUCGau-GGCGGCGu---UG- -5'
29795 5' -54.2 NC_006273.1 + 1276 0.69 0.903656
Target:  5'- cGACGCgGg--CAcGCUGCUGCCGCucgGACg -3'
miRNA:   3'- -CUGUGgCauaGU-CGAUGGCGGCG---UUG- -5'
29795 5' -54.2 NC_006273.1 + 1366 0.71 0.813669
Target:  5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3'
miRNA:   3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 1609 0.69 0.909761
Target:  5'- gGGCGagGUGgugCGGCUguACCGCUGCAACc -3'
miRNA:   3'- -CUGUggCAUa--GUCGA--UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 2292 0.72 0.777901
Target:  5'- gGGCGCCGUGuUCGGgUACUGcCCGCugGACg -3'
miRNA:   3'- -CUGUGGCAU-AGUCgAUGGC-GGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 2387 0.67 0.961549
Target:  5'- uGGCGCUGgggcgcgaGUCGGCgcCCGCCGCc-- -3'
miRNA:   3'- -CUGUGGCa-------UAGUCGauGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 7699 0.69 0.915635
Target:  5'- cGGCGgCGg--CAGUgGCCGCgGCAGCg -3'
miRNA:   3'- -CUGUgGCauaGUCGaUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 8420 0.71 0.854681
Target:  5'- uGGCGCCGUG-CAGUUGCCGCgCcCAAa -3'
miRNA:   3'- -CUGUGGCAUaGUCGAUGGCG-GcGUUg -5'
29795 5' -54.2 NC_006273.1 + 12095 0.66 0.982808
Target:  5'- aACGCCcugggGUCAGCUcauCUGCUGCGAa -3'
miRNA:   3'- cUGUGGca---UAGUCGAu--GGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 13585 0.66 0.980797
Target:  5'- -cCGCCGgg-CGGCccggGCCGCCGUg-- -3'
miRNA:   3'- cuGUGGCauaGUCGa---UGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 14340 0.66 0.978616
Target:  5'- uGACGgCGcugCAGUugUGCCGCCGgAGCu -3'
miRNA:   3'- -CUGUgGCauaGUCG--AUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 16394 0.67 0.964899
Target:  5'- aGACGCCGUuugcuacgCGGgUACCGCa-CGACg -3'
miRNA:   3'- -CUGUGGCAua------GUCgAUGGCGgcGUUG- -5'
29795 5' -54.2 NC_006273.1 + 17192 0.66 0.976256
Target:  5'- -cCGCCG--UCGGCcGCCGCCcaugccacGCGACg -3'
miRNA:   3'- cuGUGGCauAGUCGaUGGCGG--------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 19983 0.76 0.54959
Target:  5'- cACGCCGUAUCAcccgaaCUGCCGUCGCGAa -3'
miRNA:   3'- cUGUGGCAUAGUc-----GAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 21226 0.68 0.950187
Target:  5'- -cCGCCGcugUGGCUGCCGCUGCu-- -3'
miRNA:   3'- cuGUGGCauaGUCGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 21849 0.7 0.890758
Target:  5'- cGGCGCUGggacuUUGGCUGCUgcggGCCGCGGCc -3'
miRNA:   3'- -CUGUGGCau---AGUCGAUGG----CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 22253 0.7 0.889419
Target:  5'- gGGCGCCGgcgagcgacgCGGCUccGCCGUCGguGCg -3'
miRNA:   3'- -CUGUGGCaua-------GUCGA--UGGCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 23356 0.66 0.980375
Target:  5'- aGCgACUGUGUCAGCggcugcgcauucGCCuGCCGCAu- -3'
miRNA:   3'- cUG-UGGCAUAGUCGa-----------UGG-CGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 25449 0.67 0.961549
Target:  5'- uGGCGCCGUGgguuggCAGCUgGCCGgcuugaCCGCGu- -3'
miRNA:   3'- -CUGUGGCAUa-----GUCGA-UGGC------GGCGUug -5'
29795 5' -54.2 NC_006273.1 + 30014 0.7 0.890758
Target:  5'- aGGCACCGcgaCAGCUACCGaggCGCuguACa -3'
miRNA:   3'- -CUGUGGCauaGUCGAUGGCg--GCGu--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.