miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 30253 0.66 0.982808
Target:  5'- cGAgGCUGUAucuUCGGUUugcCCGCCGgAGCc -3'
miRNA:   3'- -CUgUGGCAU---AGUCGAu--GGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 30663 0.67 0.961202
Target:  5'- cGCGCCGgg-CGGCUuccugcgGCCGgCCGCggUg -3'
miRNA:   3'- cUGUGGCauaGUCGA-------UGGC-GGCGuuG- -5'
29795 5' -54.2 NC_006273.1 + 31607 0.66 0.976256
Target:  5'- -cCGCCGgcacGUCAGUUucgcuuuCCGCCGCuuAACa -3'
miRNA:   3'- cuGUGGCa---UAGUCGAu------GGCGGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 31738 0.66 0.970975
Target:  5'- aGugGCuCGgGUCGGCUggucggGCCGUCGCGGa -3'
miRNA:   3'- -CugUG-GCaUAGUCGA------UGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 32290 0.74 0.680751
Target:  5'- cGGgACCGUcaccGUC-GCgACCGCCGCGACa -3'
miRNA:   3'- -CUgUGGCA----UAGuCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 35888 0.67 0.964899
Target:  5'- uGAUGCCGUG-CAGCgGCgGCCaGCAcaGCg -3'
miRNA:   3'- -CUGUGGCAUaGUCGaUGgCGG-CGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 38316 0.74 0.670674
Target:  5'- cGGCGCCGccgCuGCUGCCGCUGCcGCc -3'
miRNA:   3'- -CUGUGGCauaGuCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 38343 0.71 0.838823
Target:  5'- -cCACCGUcGUCGccGCUGCCGCuCGuCAGCu -3'
miRNA:   3'- cuGUGGCA-UAGU--CGAUGGCG-GC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 38391 0.66 0.980797
Target:  5'- -cCGCCGccGUCcGUcGCCGCCGCuGCg -3'
miRNA:   3'- cuGUGGCa-UAGuCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 38575 0.72 0.768617
Target:  5'- aGCACCGcgccCAGCgccaGCCaGCCGCAGCa -3'
miRNA:   3'- cUGUGGCaua-GUCGa---UGG-CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 39454 0.75 0.650435
Target:  5'- gGACGCCGUGgccCGGCgucGCCGUaggCGCAGCa -3'
miRNA:   3'- -CUGUGGCAUa--GUCGa--UGGCG---GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 39973 0.66 0.973712
Target:  5'- cACACgGUGuuUCGGCagaugcacGCCGCCGgAGCa -3'
miRNA:   3'- cUGUGgCAU--AGUCGa-------UGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 40529 0.68 0.94595
Target:  5'- uGGCGCCGca--AGCgcuCCGCCGCuucuGCg -3'
miRNA:   3'- -CUGUGGCauagUCGau-GGCGGCGu---UG- -5'
29795 5' -54.2 NC_006273.1 + 40846 0.66 0.978616
Target:  5'- aACAgCGUggCGGgUACCGUCGaCGGCg -3'
miRNA:   3'- cUGUgGCAuaGUCgAUGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 42267 0.71 0.822226
Target:  5'- cGACACCGccGUC-GUUACCGCCGgaGACc -3'
miRNA:   3'- -CUGUGGCa-UAGuCGAUGGCGGCg-UUG- -5'
29795 5' -54.2 NC_006273.1 + 43579 0.7 0.890758
Target:  5'- aGCGCCGUA--GGCaAgUGCCGCGGCg -3'
miRNA:   3'- cUGUGGCAUagUCGaUgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 44803 0.68 0.949358
Target:  5'- gGGCGCCGgcggacgugacUCGGCaGCCGCUGUAGa -3'
miRNA:   3'- -CUGUGGCau---------AGUCGaUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 45256 0.72 0.80495
Target:  5'- cGC-CCGg--CGGCUGCucgCGCCGCAACa -3'
miRNA:   3'- cUGuGGCauaGUCGAUG---GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 45395 0.76 0.579554
Target:  5'- --gGCCaGUAUCcGCUGCCGCCuGCAGCc -3'
miRNA:   3'- cugUGG-CAUAGuCGAUGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 45589 0.66 0.970975
Target:  5'- --uGCCGUGcaggCGGCcAUgGCCGCGGCu -3'
miRNA:   3'- cugUGGCAUa---GUCGaUGgCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.