miRNA display CGI


Results 41 - 60 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 46265 0.66 0.973712
Target:  5'- cGACACgGUAcugcaUCAGCcGCCGCCa---- -3'
miRNA:   3'- -CUGUGgCAU-----AGUCGaUGGCGGcguug -5'
29795 5' -54.2 NC_006273.1 + 46462 0.67 0.957983
Target:  5'- --aGCCG-GUCGGCUggacACCGCCgGUGACg -3'
miRNA:   3'- cugUGGCaUAGUCGA----UGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 48962 0.67 0.964899
Target:  5'- uGGCuaguaCGUAaagucugCAGCUGCUGCgGCAACu -3'
miRNA:   3'- -CUGug---GCAUa------GUCGAUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 49654 0.69 0.903656
Target:  5'- -uCAUCGUAgCAGUagaUGCCGCCGCGc- -3'
miRNA:   3'- cuGUGGCAUaGUCG---AUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 53796 0.66 0.982808
Target:  5'- uACGCCGUGUUgauGGCUACa-UCGCAAa -3'
miRNA:   3'- cUGUGGCAUAG---UCGAUGgcGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 56716 0.66 0.980797
Target:  5'- -cCACCGcgGUCGuGCUucuugccgccACCGCCGCcACc -3'
miRNA:   3'- cuGUGGCa-UAGU-CGA----------UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 63822 0.69 0.897321
Target:  5'- -cCACCGg--CAGCgGCaCGCCGCGAg -3'
miRNA:   3'- cuGUGGCauaGUCGaUG-GCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 64102 0.68 0.94595
Target:  5'- uGGCGCCGUc---GUUACCGCggUGCAACg -3'
miRNA:   3'- -CUGUGGCAuaguCGAUGGCG--GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 64311 0.75 0.640291
Target:  5'- aGGCGCCcugggaAUCGGCgccccaACCGCCGCGACu -3'
miRNA:   3'- -CUGUGGca----UAGUCGa-----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 67119 0.7 0.876966
Target:  5'- uGACGCCGUcaGUCuGUUAUUGCaGCAACu -3'
miRNA:   3'- -CUGUGGCA--UAGuCGAUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68064 0.74 0.680751
Target:  5'- -cCGCCGUGgccgCcGCUGCCGCCGCu-- -3'
miRNA:   3'- cuGUGGCAUa---GuCGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 68267 0.66 0.970975
Target:  5'- aACGCUGcuagAUCAGCagGCCGaCGCGGCc -3'
miRNA:   3'- cUGUGGCa---UAGUCGa-UGGCgGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68356 0.66 0.980161
Target:  5'- --gGCCGUG-CAGCUGCaaaucagcgccucgUGCgGCAACg -3'
miRNA:   3'- cugUGGCAUaGUCGAUG--------------GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68436 0.67 0.957983
Target:  5'- -uCACCGUGUUAGCgg--GCCaGCAGCu -3'
miRNA:   3'- cuGUGGCAUAGUCGauggCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68863 0.71 0.846848
Target:  5'- cGAcCACCGUuacCAguaccaccGCUGCCGCCGCcACg -3'
miRNA:   3'- -CU-GUGGCAua-GU--------CGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 69808 0.66 0.980797
Target:  5'- --aGCCGccGUCAGCgucgcuccUACCGCCGCc-- -3'
miRNA:   3'- cugUGGCa-UAGUCG--------AUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 70327 0.67 0.957983
Target:  5'- cGCGCCGUgcgucugcccGUgAGC-ACCGCUGCcGCg -3'
miRNA:   3'- cUGUGGCA----------UAgUCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 70672 0.66 0.973712
Target:  5'- cGACACgGUggCGGCgguggaggGCgCGCgGCAACu -3'
miRNA:   3'- -CUGUGgCAuaGUCGa-------UG-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 70910 0.69 0.926679
Target:  5'- cGCACgaGU-UCAGCaGCCGCCGCGc- -3'
miRNA:   3'- cUGUGg-CAuAGUCGaUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 70935 0.7 0.890758
Target:  5'- cGACAUCGUcAUCgAGCgGCCGCgGCcGCa -3'
miRNA:   3'- -CUGUGGCA-UAG-UCGaUGGCGgCGuUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.