miRNA display CGI


Results 61 - 80 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 71102 0.66 0.970975
Target:  5'- uGugGCCGUGgcaccCGGC-GCCGCCaGCAc- -3'
miRNA:   3'- -CugUGGCAUa----GUCGaUGGCGG-CGUug -5'
29795 5' -54.2 NC_006273.1 + 71543 0.67 0.954197
Target:  5'- -uCGCCGg--CGGCcGCUGCCgGCGACu -3'
miRNA:   3'- cuGUGGCauaGUCGaUGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 72375 0.78 0.454064
Target:  5'- cGGCGCCcgcGUGUC--CUACCGCCGCAGCu -3'
miRNA:   3'- -CUGUGG---CAUAGucGAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 72604 0.68 0.94595
Target:  5'- cGACAUgCGg--CcGCUGCCGCCGCcACc -3'
miRNA:   3'- -CUGUG-GCauaGuCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 73693 0.77 0.529881
Target:  5'- gGAgGCCGUGg-AGCgagUGCCGCCGCAGCc -3'
miRNA:   3'- -CUgUGGCAUagUCG---AUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 73759 0.7 0.890758
Target:  5'- aGGC-CCGg--CAGCggcGCCGCCaGCGGCg -3'
miRNA:   3'- -CUGuGGCauaGUCGa--UGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 74557 0.71 0.813669
Target:  5'- -uCACCGa--CAGC-AUCGCCGCAGCa -3'
miRNA:   3'- cuGUGGCauaGUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 75097 0.67 0.954197
Target:  5'- cGGCcCCGUccacCAGCUccgucGCCGCCGCuACc -3'
miRNA:   3'- -CUGuGGCAua--GUCGA-----UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 78136 0.68 0.949358
Target:  5'- uGACACUGUAcggcagaaaagcCGGCUccaagugcaagcGCCGCgGCAGCa -3'
miRNA:   3'- -CUGUGGCAUa-----------GUCGA------------UGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 79806 0.66 0.982808
Target:  5'- cGACGCCGc--CA-CUACUGCCGgAGCc -3'
miRNA:   3'- -CUGUGGCauaGUcGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 80748 0.75 0.630139
Target:  5'- aACGCCGUcUCGucGUUGCCGCCGguGCu -3'
miRNA:   3'- cUGUGGCAuAGU--CGAUGGCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 83357 0.7 0.892751
Target:  5'- cGGCGCCGUGgugggaggacccgCGggccacgucgggcuGCUGCCGCCGCcACc -3'
miRNA:   3'- -CUGUGGCAUa------------GU--------------CGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 84422 0.67 0.962915
Target:  5'- aGACGCCGUcacgcaggugAggcucucggaucugCGGCUcaaacACCGCUGCGGCa -3'
miRNA:   3'- -CUGUGGCA----------Ua-------------GUCGA-----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 85411 0.7 0.883281
Target:  5'- aGACGCCGUAgccgauaUCGGCcGCCaacGCCGUAucGCg -3'
miRNA:   3'- -CUGUGGCAU-------AGUCGaUGG---CGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 87600 0.71 0.846848
Target:  5'- cGACGCCGUccGUC-GCcGCUGuuGCGGCg -3'
miRNA:   3'- -CUGUGGCA--UAGuCGaUGGCggCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 87655 0.66 0.982808
Target:  5'- --uGCUGUGUCgguGGCUGCUGuuGCuGCu -3'
miRNA:   3'- cugUGGCAUAG---UCGAUGGCggCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 90287 0.66 0.976256
Target:  5'- uGCcCCGcagguggugAUCAGC-GCCGCCGcCAGCg -3'
miRNA:   3'- cUGuGGCa--------UAGUCGaUGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 90594 0.67 0.954197
Target:  5'- cGGCACCGgGUgugacugcaaCAGCgaggccacgGCCGCCGCGu- -3'
miRNA:   3'- -CUGUGGCaUA----------GUCGa--------UGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 91062 0.7 0.869746
Target:  5'- gGACGCC-UGaCAGCccACCGCCGCGcACa -3'
miRNA:   3'- -CUGUGGcAUaGUCGa-UGGCGGCGU-UG- -5'
29795 5' -54.2 NC_006273.1 + 91899 0.67 0.96804
Target:  5'- aGGCGCCGUAgcUCA-UUugCGCCGCc-- -3'
miRNA:   3'- -CUGUGGCAU--AGUcGAugGCGGCGuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.