miRNA display CGI


Results 81 - 100 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 92958 0.66 0.982808
Target:  5'- uGACGUgGaGUCGGCcuccACCGCCGUGGCg -3'
miRNA:   3'- -CUGUGgCaUAGUCGa---UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 93198 0.68 0.949774
Target:  5'- cACGCUGUccgagggGUC-GCUGCCGCCGguGa -3'
miRNA:   3'- cUGUGGCA-------UAGuCGAUGGCGGCguUg -5'
29795 5' -54.2 NC_006273.1 + 94490 0.67 0.96804
Target:  5'- cGCACCGggGUCccGGUUcCCGuCCGCGGCc -3'
miRNA:   3'- cUGUGGCa-UAG--UCGAuGGC-GGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 95139 0.69 0.926679
Target:  5'- cGGCAaaGgcUCAGCcGCgGCCGCGAa -3'
miRNA:   3'- -CUGUggCauAGUCGaUGgCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 96472 0.7 0.883972
Target:  5'- -cCACCGUGUUc-CUGgUGCCGCGACg -3'
miRNA:   3'- cuGUGGCAUAGucGAUgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 96668 0.67 0.954197
Target:  5'- gGACAaCGUgAUCAGCaucgACCaCCGCGGCg -3'
miRNA:   3'- -CUGUgGCA-UAGUCGa---UGGcGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 100177 0.66 0.980587
Target:  5'- gGGCGCCuaggAUCAGgUccgagacAgCGCCGCAGCg -3'
miRNA:   3'- -CUGUGGca--UAGUCgA-------UgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 100884 0.69 0.921274
Target:  5'- cGACGCCacggcGUGUCcuuGCUACCGaCUGCAc- -3'
miRNA:   3'- -CUGUGG-----CAUAGu--CGAUGGC-GGCGUug -5'
29795 5' -54.2 NC_006273.1 + 101877 0.68 0.941482
Target:  5'- -uCAgCGUAgUCGGCUaacaaagcccggGCCGCCGcCAGCg -3'
miRNA:   3'- cuGUgGCAU-AGUCGA------------UGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 102583 0.67 0.957983
Target:  5'- uGGgGCCGgu---GCUGCCGCCGUcguuGACg -3'
miRNA:   3'- -CUgUGGCauaguCGAUGGCGGCG----UUG- -5'
29795 5' -54.2 NC_006273.1 + 103025 0.72 0.777901
Target:  5'- aACGCCGcggCGGCaGCgGCCGCGGCu -3'
miRNA:   3'- cUGUGGCauaGUCGaUGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 103525 0.66 0.978616
Target:  5'- --uGCCGUcgauGCgGCCGCCGUAGCc -3'
miRNA:   3'- cugUGGCAuaguCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 103730 0.68 0.93963
Target:  5'- gGGCGCCGcGUCAGCgucguaagccaccACgCGCCGguACu -3'
miRNA:   3'- -CUGUGGCaUAGUCGa------------UG-GCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 104329 0.68 0.93869
Target:  5'- aGGC-CCGgcgCAGCUGCUGCCccguaaagucaaaugGCGGCg -3'
miRNA:   3'- -CUGuGGCauaGUCGAUGGCGG---------------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 105909 0.71 0.838823
Target:  5'- cGACGCCucgcgcUCAcGCcGCCGCCGCGAUg -3'
miRNA:   3'- -CUGUGGcau---AGU-CGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 109328 0.67 0.96804
Target:  5'- cGGCACgCGgc-CGGCguagaACgGCCGCAACu -3'
miRNA:   3'- -CUGUG-GCauaGUCGa----UGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 110522 0.66 0.980797
Target:  5'- cGACGCgcUAUgCGuGCUGCCGCCGCu-- -3'
miRNA:   3'- -CUGUGgcAUA-GU-CGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 111249 0.67 0.954197
Target:  5'- cGACACag---CGGCaaaUGCCGCCGcCAACg -3'
miRNA:   3'- -CUGUGgcauaGUCG---AUGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 111874 0.68 0.950187
Target:  5'- cACGCCGcugcugaaaCGGCUACCGCUaCGACg -3'
miRNA:   3'- cUGUGGCaua------GUCGAUGGCGGcGUUG- -5'
29795 5' -54.2 NC_006273.1 + 112560 0.78 0.463232
Target:  5'- -uCGCCGcGUCAGCgGCCGCCGguGCu -3'
miRNA:   3'- cuGUGGCaUAGUCGaUGGCGGCguUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.