miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 234772 0.7 0.869746
Target:  5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3'
miRNA:   3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 234629 0.67 0.96804
Target:  5'- aGCGCCGgacaCAGCa--CGCCGCAAa -3'
miRNA:   3'- cUGUGGCaua-GUCGaugGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 234347 0.75 0.650435
Target:  5'- gGACGCCGUGgccCGGCgucGCCGUaggCGCAGCa -3'
miRNA:   3'- -CUGUGGCAUa--GUCGa--UGGCG---GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 233662 0.71 0.812804
Target:  5'- uGCGCUGUcggcccaGUC-GCcACCGCCGCGGCg -3'
miRNA:   3'- cUGUGGCA-------UAGuCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 233534 0.7 0.890758
Target:  5'- cGGCAgCGUacgacguuccaGUCAGCgagGCCGUCGCGuugGCg -3'
miRNA:   3'- -CUGUgGCA-----------UAGUCGa--UGGCGGCGU---UG- -5'
29795 5' -54.2 NC_006273.1 + 233501 0.68 0.931848
Target:  5'- aGACGCUGguUCAGgUGCCgacgcacgGCCGUAGCa -3'
miRNA:   3'- -CUGUGGCauAGUCgAUGG--------CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 233468 0.72 0.768617
Target:  5'- aGCACCGcgccCAGCgccaGCCaGCCGCAGCa -3'
miRNA:   3'- cUGUGGCaua-GUCGa---UGG-CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 233209 0.74 0.670674
Target:  5'- cGGCGCCGccgCuGCUGCCGCUGCcGCc -3'
miRNA:   3'- -CUGUGGCauaGuCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 232832 0.66 0.980797
Target:  5'- aGCACC---UCAGCc-UCGCCGCGGCc -3'
miRNA:   3'- cUGUGGcauAGUCGauGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 227732 0.71 0.830614
Target:  5'- --gGCCGacaaaUcgCAGCUgucuucGCCGCCGCAGCu -3'
miRNA:   3'- cugUGGC-----AuaGUCGA------UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 227350 0.66 0.975513
Target:  5'- --aGCUGUGUCuucggcgcauguugGGuCUGCCGCCGCcACc -3'
miRNA:   3'- cugUGGCAUAG--------------UC-GAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 222808 0.66 0.973712
Target:  5'- aGACGCCuuugagGUucUCGGCcugGCCGCagaGCAGCa -3'
miRNA:   3'- -CUGUGG------CAu-AGUCGa--UGGCGg--CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 220386 0.68 0.950187
Target:  5'- uGCACCGUuuucAUCAGCcGCauaaucaccgUGCCGUAACc -3'
miRNA:   3'- cUGUGGCA----UAGUCGaUG----------GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 218739 0.66 0.976256
Target:  5'- cGGCGCCcag-CAGgUACCaGCgGCAACg -3'
miRNA:   3'- -CUGUGGcauaGUCgAUGG-CGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 217987 0.66 0.980797
Target:  5'- cGugGCCGg--CGGCcaUACgCGCgGCAACc -3'
miRNA:   3'- -CugUGGCauaGUCG--AUG-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 216973 0.71 0.854681
Target:  5'- --gGCCGUcUUGGCcACgGCCGCAGCg -3'
miRNA:   3'- cugUGGCAuAGUCGaUGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 215712 0.66 0.976256
Target:  5'- aACGCCGg--CGGUUAUCGCCGaGAUu -3'
miRNA:   3'- cUGUGGCauaGUCGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 215419 0.68 0.941482
Target:  5'- uGACGCCGUGaCAGCca-CGCUgguaaGCAACg -3'
miRNA:   3'- -CUGUGGCAUaGUCGaugGCGG-----CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 214993 0.77 0.500826
Target:  5'- cGACGCCGcugcuguggCAGCgACCGUCGCAGCg -3'
miRNA:   3'- -CUGUGGCaua------GUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 214871 0.67 0.957983
Target:  5'- uGGCgACgGUcUCGGCacaaaGCCGCUGCGGCg -3'
miRNA:   3'- -CUG-UGgCAuAGUCGa----UGGCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.