miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 213082 0.73 0.749697
Target:  5'- uGGCGCCGcugccgcGUCGGgUACCGCUGCcGCa -3'
miRNA:   3'- -CUGUGGCa------UAGUCgAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 212413 0.69 0.903656
Target:  5'- -cCGCCGUGuuucUCGGCgUACUGCUGCAc- -3'
miRNA:   3'- cuGUGGCAU----AGUCG-AUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 209955 0.66 0.973712
Target:  5'- cGGCGCCauagGUGUgCAGCgccaCGCgGCAACa -3'
miRNA:   3'- -CUGUGG----CAUA-GUCGaug-GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 205006 0.66 0.982808
Target:  5'- aGCGaCGUGaCgAGCUGCgaCGCCGCGACg -3'
miRNA:   3'- cUGUgGCAUaG-UCGAUG--GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 204734 0.66 0.978616
Target:  5'- cGCugCGaucugCGGUUGCCGaCGCGACg -3'
miRNA:   3'- cUGugGCaua--GUCGAUGGCgGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 204580 0.68 0.931848
Target:  5'- -uUACUGgugGUCGacugcuGCUACCGCCGCuGCu -3'
miRNA:   3'- cuGUGGCa--UAGU------CGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 204013 0.7 0.883972
Target:  5'- cGAUGCCG---CAGCUcuucguccaGCCGCCGCAGa -3'
miRNA:   3'- -CUGUGGCauaGUCGA---------UGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 202853 0.67 0.964899
Target:  5'- cGGCAaCGUgccAUCAgcGCUGuuGCCGUAACa -3'
miRNA:   3'- -CUGUgGCA---UAGU--CGAUggCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 202707 0.66 0.973447
Target:  5'- aGACugCGUcaCGGCaACCGCUcgggccuGCGACg -3'
miRNA:   3'- -CUGugGCAuaGUCGaUGGCGG-------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 202085 0.73 0.740081
Target:  5'- gGACGCCGagcugagCAaccacgccaaccGCUGCCGCCGCAAg -3'
miRNA:   3'- -CUGUGGCaua----GU------------CGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 202037 0.66 0.973712
Target:  5'- cGCGCCGcaggAUCGcacGCgGCUGCCGCAGu -3'
miRNA:   3'- cUGUGGCa---UAGU---CGaUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 201258 0.67 0.96804
Target:  5'- --gGCCGgcuUGUCGGCgAUUGUCGCGACa -3'
miRNA:   3'- cugUGGC---AUAGUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 200370 0.66 0.970975
Target:  5'- --aGCCGcUGUCuGGCUuuACCGCCGUcGCu -3'
miRNA:   3'- cugUGGC-AUAG-UCGA--UGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 199494 0.66 0.980797
Target:  5'- -cCGCUGUGcUGGCcGCCGCUGCAcgGCa -3'
miRNA:   3'- cuGUGGCAUaGUCGaUGGCGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 198712 0.66 0.97601
Target:  5'- aACACCauaggucgugugaGUcGUCGGCUAcCCGCCGCcaGGCc -3'
miRNA:   3'- cUGUGG-------------CA-UAGUCGAU-GGCGGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 198045 0.66 0.973712
Target:  5'- gGGCcCCGgcccaccUCcGCUGCCGCCaaaGCAACg -3'
miRNA:   3'- -CUGuGGCau-----AGuCGAUGGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 197655 0.69 0.921274
Target:  5'- aGACGCUGcGUCGGUUucuaCGCgGCGACa -3'
miRNA:   3'- -CUGUGGCaUAGUCGAug--GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 197280 0.67 0.961549
Target:  5'- uGGCGCUGgggcgcgaGUCGGCgcCCGCCGCc-- -3'
miRNA:   3'- -CUGUGGCa-------UAGUCGauGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 197206 0.69 0.909761
Target:  5'- cGGCGCgGgcUCGGCgucCCGCCGUccgaGACg -3'
miRNA:   3'- -CUGUGgCauAGUCGau-GGCGGCG----UUG- -5'
29795 5' -54.2 NC_006273.1 + 197185 0.72 0.777901
Target:  5'- gGGCGCCGUGuUCGGgUACUGcCCGCugGACg -3'
miRNA:   3'- -CUGUGGCAU-AGUCgAUGGC-GGCG--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.