miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 196971 0.66 0.973712
Target:  5'- -uCGCuCGUcgCuGUUGCCGCCaccGCAGCg -3'
miRNA:   3'- cuGUG-GCAuaGuCGAUGGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 196502 0.69 0.909761
Target:  5'- gGGCGagGUGgugCGGCUguACCGCUGCAACc -3'
miRNA:   3'- -CUGUggCAUa--GUCGA--UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 196259 0.71 0.813669
Target:  5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3'
miRNA:   3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 196215 0.73 0.740081
Target:  5'- aACGCCGc-UCGGagcACCGCCGCAGCc -3'
miRNA:   3'- cUGUGGCauAGUCga-UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 196169 0.69 0.903656
Target:  5'- cGACGCgGg--CAcGCUGCUGCCGCucgGACg -3'
miRNA:   3'- -CUGUGgCauaGU-CGAUGGCGGCG---UUG- -5'
29795 5' -54.2 NC_006273.1 + 195536 0.67 0.961549
Target:  5'- cACAgCGUGacuuugagCGGCUcGCCGCCGCGccACa -3'
miRNA:   3'- cUGUgGCAUa-------GUCGA-UGGCGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 194834 0.7 0.869746
Target:  5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3'
miRNA:   3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 194691 0.67 0.96804
Target:  5'- aGCGCCGgacaCAGCa--CGCCGCAAa -3'
miRNA:   3'- cUGUGGCaua-GUCGaugGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 193192 0.67 0.96804
Target:  5'- gGAgACCGUggacgaaaaagAgaacggagCAGCUACCGCUgGCGGCg -3'
miRNA:   3'- -CUgUGGCA-----------Ua-------GUCGAUGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 192160 0.7 0.869746
Target:  5'- aGCGCCGUAgcCGGCccgccUGCCGaUCGCGACg -3'
miRNA:   3'- cUGUGGCAUa-GUCG-----AUGGC-GGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 190745 0.71 0.846848
Target:  5'- aACGCCac--CAGCUGCCGCCG-AACg -3'
miRNA:   3'- cUGUGGcauaGUCGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 188093 0.69 0.915635
Target:  5'- -cCACCGUGUCgaagcgacAGCcGCUGCCGUAGu -3'
miRNA:   3'- cuGUGGCAUAG--------UCGaUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 186316 0.68 0.94595
Target:  5'- -cCACCGUuUCAGCgGCCGgCGUGAg -3'
miRNA:   3'- cuGUGGCAuAGUCGaUGGCgGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 185888 0.7 0.869746
Target:  5'- aACGCCGUuau-GCUcuACCGCgGCGACg -3'
miRNA:   3'- cUGUGGCAuaguCGA--UGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 183784 0.74 0.670674
Target:  5'- cGC-CCGUGUCGgaagaagaccccGCUGCCGCCGCcACc -3'
miRNA:   3'- cUGuGGCAUAGU------------CGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 181455 0.69 0.903656
Target:  5'- uGACGCucgaCGUGUacuGCUGCCGCCagaccuccaGCAACa -3'
miRNA:   3'- -CUGUG----GCAUAgu-CGAUGGCGG---------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 180052 0.68 0.950187
Target:  5'- cGGCGCCGUcuUCGGCgugcaucCCGauaCGCGGCa -3'
miRNA:   3'- -CUGUGGCAu-AGUCGau-----GGCg--GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 179242 0.66 0.973712
Target:  5'- cGACcuCCGcGUCGGUcGCCGCCuccGCGGCc -3'
miRNA:   3'- -CUGu-GGCaUAGUCGaUGGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 177531 0.66 0.980797
Target:  5'- cGGCGgCGUugaacgugGUCcuuuuguuGgUGCCGCCGCGACg -3'
miRNA:   3'- -CUGUgGCA--------UAGu-------CgAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 177243 0.66 0.978616
Target:  5'- -cCACCGUGgugCGGagGCCGCUGCGc- -3'
miRNA:   3'- cuGUGGCAUa--GUCgaUGGCGGCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.