miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 177015 0.67 0.954197
Target:  5'- --aAUUGUAUCGGUUGCCGCgGCu-- -3'
miRNA:   3'- cugUGGCAUAGUCGAUGGCGgCGuug -5'
29795 5' -54.2 NC_006273.1 + 176516 0.66 0.978616
Target:  5'- cGACAgCGUGUgc-CUGCCGCCGUg-- -3'
miRNA:   3'- -CUGUgGCAUAgucGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 176170 0.66 0.970975
Target:  5'- uGCGCCuUGUCGuuUACUuuGCCGCAGCg -3'
miRNA:   3'- cUGUGGcAUAGUcgAUGG--CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 174153 0.66 0.973712
Target:  5'- gGGC-CCGcAUCuGCUgcACCGCCGCcucgaGACg -3'
miRNA:   3'- -CUGuGGCaUAGuCGA--UGGCGGCG-----UUG- -5'
29795 5' -54.2 NC_006273.1 + 171116 0.8 0.384522
Target:  5'- aGGCGCCauccgcuUCGGCcGCCGCCGCAACg -3'
miRNA:   3'- -CUGUGGcau----AGUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 169954 0.67 0.964899
Target:  5'- uGCcuCCGUGUUuGCUACCGCUgagguccuuGCGGCg -3'
miRNA:   3'- cUGu-GGCAUAGuCGAUGGCGG---------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 169700 0.68 0.931848
Target:  5'- aGCGCCGcuuUCGGUacCCGCCGCGuGCa -3'
miRNA:   3'- cUGUGGCau-AGUCGauGGCGGCGU-UG- -5'
29795 5' -54.2 NC_006273.1 + 168607 0.71 0.830614
Target:  5'- --gGCCaGUGUCAGC-GCCgaGCCGCGGCu -3'
miRNA:   3'- cugUGG-CAUAGUCGaUGG--CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 167025 0.78 0.454064
Target:  5'- uGCGCCGUGcUCAGCUGCuCGUCGCGu- -3'
miRNA:   3'- cUGUGGCAU-AGUCGAUG-GCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 166466 0.67 0.96804
Target:  5'- gGAUGCCGUGUaaCAGCgcaaaguauuCCGUCGcCAACg -3'
miRNA:   3'- -CUGUGGCAUA--GUCGau--------GGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 165961 0.66 0.980797
Target:  5'- cGGCGCCGccaugccagggGUCGGCcAUCGUcuCGCAGCg -3'
miRNA:   3'- -CUGUGGCa----------UAGUCGaUGGCG--GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 164432 0.66 0.982808
Target:  5'- aACACgGUAUugagCAGCaGCaCGCCGCGucGCg -3'
miRNA:   3'- cUGUGgCAUA----GUCGaUG-GCGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 163846 0.68 0.931848
Target:  5'- -uCGCCGg--CAGCgGCCGCCgGCGAg -3'
miRNA:   3'- cuGUGGCauaGUCGaUGGCGG-CGUUg -5'
29795 5' -54.2 NC_006273.1 + 163663 0.66 0.978616
Target:  5'- -cCGCUGUGUCAgGCUGCgCGCUGguuaAACa -3'
miRNA:   3'- cuGUGGCAUAGU-CGAUG-GCGGCg---UUG- -5'
29795 5' -54.2 NC_006273.1 + 163585 0.7 0.890758
Target:  5'- aACcCCGuUGUC-GCcACCGCCGCGGCu -3'
miRNA:   3'- cUGuGGC-AUAGuCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 163499 0.72 0.796076
Target:  5'- -uCGCCgGUGUCGcgcccGUUGCCGCCGCAGu -3'
miRNA:   3'- cuGUGG-CAUAGU-----CGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 163393 0.69 0.915635
Target:  5'- aGCAgCGUcgCGaggACCGCCGCAGCu -3'
miRNA:   3'- cUGUgGCAuaGUcgaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 162913 0.68 0.950187
Target:  5'- aACGCCGUGaCGGaCgugGCCGCCGgcacCGACg -3'
miRNA:   3'- cUGUGGCAUaGUC-Ga--UGGCGGC----GUUG- -5'
29795 5' -54.2 NC_006273.1 + 162588 0.67 0.957983
Target:  5'- uGCGCCGUcugCGGCUcuacCCGCCcgaGCGGCu -3'
miRNA:   3'- cUGUGGCAua-GUCGAu---GGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 161635 0.72 0.767681
Target:  5'- cGGCGCCGcUGccgggccUCGGCcGCCGCCGCcACc -3'
miRNA:   3'- -CUGUGGC-AU-------AGUCGaUGGCGGCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.