miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 38343 0.71 0.838823
Target:  5'- -cCACCGUcGUCGccGCUGCCGCuCGuCAGCu -3'
miRNA:   3'- cuGUGGCA-UAGU--CGAUGGCG-GC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 233468 0.72 0.768617
Target:  5'- aGCACCGcgccCAGCgccaGCCaGCCGCAGCa -3'
miRNA:   3'- cUGUGGCaua-GUCGa---UGG-CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 197185 0.72 0.777901
Target:  5'- gGGCGCCGUGuUCGGgUACUGcCCGCugGACg -3'
miRNA:   3'- -CUGUGGCAU-AGUCgAUGGC-GGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 163499 0.72 0.796076
Target:  5'- -uCGCCgGUGUCGcgcccGUUGCCGCCGCAGu -3'
miRNA:   3'- cuGUGG-CAUAGU-----CGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 132495 0.72 0.80495
Target:  5'- -uCGCCGUGU--GUUACCGCCGCcGCc -3'
miRNA:   3'- cuGUGGCAUAguCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 45256 0.72 0.80495
Target:  5'- cGC-CCGg--CGGCUGCucgCGCCGCAACa -3'
miRNA:   3'- cUGuGGCauaGUCGAUG---GCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 196259 0.71 0.813669
Target:  5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3'
miRNA:   3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 136100 0.71 0.835561
Target:  5'- gGACGCCGUGggCGGCgaucgcgcuuuugACCGCgaGCGGCg -3'
miRNA:   3'- -CUGUGGCAUa-GUCGa------------UGGCGg-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 122633 0.71 0.838823
Target:  5'- aGCACCGag--AGCUGCUGuuGCGACg -3'
miRNA:   3'- cUGUGGCauagUCGAUGGCggCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 130205 0.73 0.759212
Target:  5'- -cCGCCGUcucCGGCUACCugggcgagGCCGCGGCg -3'
miRNA:   3'- cuGUGGCAua-GUCGAUGG--------CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 124152 0.73 0.710712
Target:  5'- -cCGCUGUGUCGGCUGCUauuGCUGcCAACg -3'
miRNA:   3'- cuGUGGCAUAGUCGAUGG---CGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 32290 0.74 0.680751
Target:  5'- cGGgACCGUcaccGUC-GCgACCGCCGCGACa -3'
miRNA:   3'- -CUgUGGCA----UAGuCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 112560 0.78 0.463232
Target:  5'- -uCGCCGcGUCAGCgGCCGCCGguGCu -3'
miRNA:   3'- cuGUGGCaUAGUCGaUGGCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 214993 0.77 0.500826
Target:  5'- cGACGCCGcugcuguggCAGCgACCGUCGCAGCg -3'
miRNA:   3'- -CUGUGGCaua------GUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 19983 0.76 0.54959
Target:  5'- cACGCCGUAUCAcccgaaCUGCCGUCGCGAa -3'
miRNA:   3'- cUGUGGCAUAGUc-----GAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 45395 0.76 0.579554
Target:  5'- --gGCCaGUAUCcGCUGCCGCCuGCAGCc -3'
miRNA:   3'- cugUGG-CAUAGuCGAUGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 132360 0.75 0.609849
Target:  5'- --aGCCGcggCcGCUGCCGCCGCGGCg -3'
miRNA:   3'- cugUGGCauaGuCGAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 64311 0.75 0.640291
Target:  5'- aGGCGCCcugggaAUCGGCgccccaACCGCCGCGACu -3'
miRNA:   3'- -CUGUGGca----UAGUCGa-----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 234347 0.75 0.650435
Target:  5'- gGACGCCGUGgccCGGCgucGCCGUaggCGCAGCa -3'
miRNA:   3'- -CUGUGGCAUa--GUCGa--UGGCG---GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 233209 0.74 0.670674
Target:  5'- cGGCGCCGccgCuGCUGCCGCUGCcGCc -3'
miRNA:   3'- -CUGUGGCauaGuCGAUGGCGGCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.