miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 132360 0.75 0.609849
Target:  5'- --aGCCGcggCcGCUGCCGCCGCGGCg -3'
miRNA:   3'- cugUGGCauaGuCGAUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 45395 0.76 0.579554
Target:  5'- --gGCCaGUAUCcGCUGCCGCCuGCAGCc -3'
miRNA:   3'- cugUGG-CAUAGuCGAUGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 19983 0.76 0.54959
Target:  5'- cACGCCGUAUCAcccgaaCUGCCGUCGCGAa -3'
miRNA:   3'- cUGUGGCAUAGUc-----GAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 214993 0.77 0.500826
Target:  5'- cGACGCCGcugcuguggCAGCgACCGUCGCAGCg -3'
miRNA:   3'- -CUGUGGCaua------GUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 112560 0.78 0.463232
Target:  5'- -uCGCCGcGUCAGCgGCCGCCGguGCu -3'
miRNA:   3'- cuGUGGCaUAGUCGaUGGCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 163499 0.72 0.796076
Target:  5'- -uCGCCgGUGUCGcgcccGUUGCCGCCGCAGu -3'
miRNA:   3'- cuGUGG-CAUAGU-----CGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 132495 0.72 0.80495
Target:  5'- -uCGCCGUGU--GUUACCGCCGCcGCc -3'
miRNA:   3'- cuGUGGCAUAguCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 138037 0.7 0.876966
Target:  5'- cGGCGCCGgcgCcuGGUUGCUGCCGCGu- -3'
miRNA:   3'- -CUGUGGCauaG--UCGAUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 67119 0.7 0.876966
Target:  5'- uGACGCCGUcaGUCuGUUAUUGCaGCAACu -3'
miRNA:   3'- -CUGUGGCA--UAGuCGAUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 194834 0.7 0.869746
Target:  5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3'
miRNA:   3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 192160 0.7 0.869746
Target:  5'- aGCGCCGUAgcCGGCccgccUGCCGaUCGCGACg -3'
miRNA:   3'- cUGUGGCAUa-GUCG-----AUGGC-GGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 91062 0.7 0.869746
Target:  5'- gGACGCC-UGaCAGCccACCGCCGCGcACa -3'
miRNA:   3'- -CUGUGGcAUaGUCGa-UGGCGGCGU-UG- -5'
29795 5' -54.2 NC_006273.1 + 216973 0.71 0.854681
Target:  5'- --gGCCGUcUUGGCcACgGCCGCAGCg -3'
miRNA:   3'- cugUGGCAuAGUCGaUGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 87600 0.71 0.846848
Target:  5'- cGACGCCGUccGUC-GCcGCUGuuGCGGCg -3'
miRNA:   3'- -CUGUGGCA--UAGuCGaUGGCggCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 190745 0.71 0.846848
Target:  5'- aACGCCac--CAGCUGCCGCCG-AACg -3'
miRNA:   3'- cUGUGGcauaGUCGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 38343 0.71 0.838823
Target:  5'- -cCACCGUcGUCGccGCUGCCGCuCGuCAGCu -3'
miRNA:   3'- cuGUGGCA-UAGU--CGAUGGCG-GC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 122633 0.71 0.838823
Target:  5'- aGCACCGag--AGCUGCUGuuGCGACg -3'
miRNA:   3'- cUGUGGCauagUCGAUGGCggCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 136100 0.71 0.835561
Target:  5'- gGACGCCGUGggCGGCgaucgcgcuuuugACCGCgaGCGGCg -3'
miRNA:   3'- -CUGUGGCAUa-GUCGa------------UGGCGg-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 196259 0.71 0.813669
Target:  5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3'
miRNA:   3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 45256 0.72 0.80495
Target:  5'- cGC-CCGg--CGGCUGCucgCGCCGCAACa -3'
miRNA:   3'- cUGuGGCauaGUCGAUG---GCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.