miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 122633 0.71 0.838823
Target:  5'- aGCACCGag--AGCUGCUGuuGCGACg -3'
miRNA:   3'- cUGUGGCauagUCGAUGGCggCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 38343 0.71 0.838823
Target:  5'- -cCACCGUcGUCGccGCUGCCGCuCGuCAGCu -3'
miRNA:   3'- cuGUGGCA-UAGU--CGAUGGCG-GC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 70935 0.7 0.890758
Target:  5'- cGACAUCGUcAUCgAGCgGCCGCgGCcGCa -3'
miRNA:   3'- -CUGUGGCA-UAG-UCGaUGGCGgCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 153777 0.7 0.890758
Target:  5'- --gGCCGcuUCGGCcuCCGCCGCGGCc -3'
miRNA:   3'- cugUGGCauAGUCGauGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 163585 0.7 0.890758
Target:  5'- aACcCCGuUGUC-GCcACCGCCGCGGCu -3'
miRNA:   3'- cUGuGGC-AUAGuCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 132141 0.69 0.903656
Target:  5'- uGCAgaGUAUCAGCgguaCGCCGCAcACg -3'
miRNA:   3'- cUGUggCAUAGUCGaug-GCGGCGU-UG- -5'
29795 5' -54.2 NC_006273.1 + 49654 0.69 0.903656
Target:  5'- -uCAUCGUAgCAGUagaUGCCGCCGCGc- -3'
miRNA:   3'- cuGUGGCAUaGUCG---AUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 196169 0.69 0.903656
Target:  5'- cGACGCgGg--CAcGCUGCUGCCGCucgGACg -3'
miRNA:   3'- -CUGUGgCauaGU-CGAUGGCGGCG---UUG- -5'
29795 5' -54.2 NC_006273.1 + 212413 0.69 0.903656
Target:  5'- -cCGCCGUGuuucUCGGCgUACUGCUGCAc- -3'
miRNA:   3'- cuGUGGCAU----AGUCG-AUGGCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 196502 0.69 0.909761
Target:  5'- gGGCGagGUGgugCGGCUguACCGCUGCAACc -3'
miRNA:   3'- -CUGUggCAUa--GUCGA--UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 73759 0.7 0.890758
Target:  5'- aGGC-CCGg--CAGCggcGCCGCCaGCGGCg -3'
miRNA:   3'- -CUGuGGCauaGUCGa--UGGCGG-CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 22253 0.7 0.889419
Target:  5'- gGGCGCCGgcgagcgacgCGGCUccGCCGUCGguGCg -3'
miRNA:   3'- -CUGUGGCaua-------GUCGA--UGGCGGCguUG- -5'
29795 5' -54.2 NC_006273.1 + 190745 0.71 0.846848
Target:  5'- aACGCCac--CAGCUGCCGCCG-AACg -3'
miRNA:   3'- cUGUGGcauaGUCGAUGGCGGCgUUG- -5'
29795 5' -54.2 NC_006273.1 + 87600 0.71 0.846848
Target:  5'- cGACGCCGUccGUC-GCcGCUGuuGCGGCg -3'
miRNA:   3'- -CUGUGGCA--UAGuCGaUGGCggCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 216973 0.71 0.854681
Target:  5'- --gGCCGUcUUGGCcACgGCCGCAGCg -3'
miRNA:   3'- cugUGGCAuAGUCGaUGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 91062 0.7 0.869746
Target:  5'- gGACGCC-UGaCAGCccACCGCCGCGcACa -3'
miRNA:   3'- -CUGUGGcAUaGUCGa-UGGCGGCGU-UG- -5'
29795 5' -54.2 NC_006273.1 + 192160 0.7 0.869746
Target:  5'- aGCGCCGUAgcCGGCccgccUGCCGaUCGCGACg -3'
miRNA:   3'- cUGUGGCAUa-GUCG-----AUGGC-GGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 194834 0.7 0.869746
Target:  5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3'
miRNA:   3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 67119 0.7 0.876966
Target:  5'- uGACGCCGUcaGUCuGUUAUUGCaGCAACu -3'
miRNA:   3'- -CUGUGGCA--UAGuCGAUGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 138037 0.7 0.876966
Target:  5'- cGGCGCCGgcgCcuGGUUGCUGCCGCGu- -3'
miRNA:   3'- -CUGUGGCauaG--UCGAUGGCGGCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.