Results 81 - 100 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29795 | 5' | -54.2 | NC_006273.1 | + | 163846 | 0.68 | 0.931848 |
Target: 5'- -uCGCCGg--CAGCgGCCGCCgGCGAg -3' miRNA: 3'- cuGUGGCauaGUCGaUGGCGG-CGUUg -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 233501 | 0.68 | 0.931848 |
Target: 5'- aGACGCUGguUCAGgUGCCgacgcacgGCCGUAGCa -3' miRNA: 3'- -CUGUGGCauAGUCgAUGG--------CGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 103730 | 0.68 | 0.93963 |
Target: 5'- gGGCGCCGcGUCAGCgucguaagccaccACgCGCCGguACu -3' miRNA: 3'- -CUGUGGCaUAGUCGa------------UG-GCGGCguUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 126696 | 0.68 | 0.941482 |
Target: 5'- aGGCGCCGUcacgacgCAGCaGCCGuuGUAAa -3' miRNA: 3'- -CUGUGGCAua-----GUCGaUGGCggCGUUg -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 215419 | 0.68 | 0.941482 |
Target: 5'- uGACGCCGUGaCAGCca-CGCUgguaaGCAACg -3' miRNA: 3'- -CUGUGGCAUaGUCGaugGCGG-----CGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 196502 | 0.69 | 0.909761 |
Target: 5'- gGGCGagGUGgugCGGCUguACCGCUGCAACc -3' miRNA: 3'- -CUGUggCAUa--GUCGA--UGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 212413 | 0.69 | 0.903656 |
Target: 5'- -cCGCCGUGuuucUCGGCgUACUGCUGCAc- -3' miRNA: 3'- cuGUGGCAU----AGUCG-AUGGCGGCGUug -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 196169 | 0.69 | 0.903656 |
Target: 5'- cGACGCgGg--CAcGCUGCUGCCGCucgGACg -3' miRNA: 3'- -CUGUGgCauaGU-CGAUGGCGGCG---UUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 194834 | 0.7 | 0.869746 |
Target: 5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3' miRNA: 3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 67119 | 0.7 | 0.876966 |
Target: 5'- uGACGCCGUcaGUCuGUUAUUGCaGCAACu -3' miRNA: 3'- -CUGUGGCA--UAGuCGAUGGCGgCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 138037 | 0.7 | 0.876966 |
Target: 5'- cGGCGCCGgcgCcuGGUUGCUGCCGCGu- -3' miRNA: 3'- -CUGUGGCauaG--UCGAUGGCGGCGUug -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 22253 | 0.7 | 0.889419 |
Target: 5'- gGGCGCCGgcgagcgacgCGGCUccGCCGUCGguGCg -3' miRNA: 3'- -CUGUGGCaua-------GUCGA--UGGCGGCguUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 73759 | 0.7 | 0.890758 |
Target: 5'- aGGC-CCGg--CAGCggcGCCGCCaGCGGCg -3' miRNA: 3'- -CUGuGGCauaGUCGa--UGGCGG-CGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 70935 | 0.7 | 0.890758 |
Target: 5'- cGACAUCGUcAUCgAGCgGCCGCgGCcGCa -3' miRNA: 3'- -CUGUGGCA-UAG-UCGaUGGCGgCGuUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 153777 | 0.7 | 0.890758 |
Target: 5'- --gGCCGcuUCGGCcuCCGCCGCGGCc -3' miRNA: 3'- cugUGGCauAGUCGauGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 163585 | 0.7 | 0.890758 |
Target: 5'- aACcCCGuUGUC-GCcACCGCCGCGGCu -3' miRNA: 3'- cUGuGGC-AUAGuCGaUGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 132141 | 0.69 | 0.903656 |
Target: 5'- uGCAgaGUAUCAGCgguaCGCCGCAcACg -3' miRNA: 3'- cUGUggCAUAGUCGaug-GCGGCGU-UG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 49654 | 0.69 | 0.903656 |
Target: 5'- -uCAUCGUAgCAGUagaUGCCGCCGCGc- -3' miRNA: 3'- cuGUGGCAUaGUCG---AUGGCGGCGUug -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 205006 | 0.66 | 0.982808 |
Target: 5'- aGCGaCGUGaCgAGCUGCgaCGCCGCGACg -3' miRNA: 3'- cUGUgGCAUaG-UCGAUG--GCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 140571 | 0.8 | 0.376337 |
Target: 5'- -cUACCGUcgucGUCGGCcgACCGCCGCGACc -3' miRNA: 3'- cuGUGGCA----UAGUCGa-UGGCGGCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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