Results 1 - 20 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29795 | 5' | -54.2 | NC_006273.1 | + | 147765 | 1.11 | 0.004826 |
Target: 5'- cGACACCGUAUCAGCUACCGCCGCAACa -3' miRNA: 3'- -CUGUGGCAUAGUCGAUGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 38575 | 0.72 | 0.768617 |
Target: 5'- aGCACCGcgccCAGCgccaGCCaGCCGCAGCa -3' miRNA: 3'- cUGUGGCaua-GUCGa---UGG-CGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 103025 | 0.72 | 0.777901 |
Target: 5'- aACGCCGcggCGGCaGCgGCCGCGGCu -3' miRNA: 3'- cUGUGGCauaGUCGaUGgCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 205006 | 0.66 | 0.982808 |
Target: 5'- aGCGaCGUGaCgAGCUGCgaCGCCGCGACg -3' miRNA: 3'- cUGUgGCAUaG-UCGAUG--GCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 167025 | 0.78 | 0.454064 |
Target: 5'- uGCGCCGUGcUCAGCUGCuCGUCGCGu- -3' miRNA: 3'- cUGUGGCAU-AGUCGAUG-GCGGCGUug -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 73693 | 0.77 | 0.529881 |
Target: 5'- gGAgGCCGUGg-AGCgagUGCCGCCGCAGCc -3' miRNA: 3'- -CUgUGGCAUagUCG---AUGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 156047 | 0.75 | 0.640291 |
Target: 5'- uGAUGCCGUGUCuGCccAUCGCCGcCAGCa -3' miRNA: 3'- -CUGUGGCAUAGuCGa-UGGCGGC-GUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 39454 | 0.75 | 0.650435 |
Target: 5'- gGACGCCGUGgccCGGCgucGCCGUaggCGCAGCa -3' miRNA: 3'- -CUGUGGCAUa--GUCGa--UGGCG---GCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 68064 | 0.74 | 0.680751 |
Target: 5'- -cCGCCGUGgccgCcGCUGCCGCCGCu-- -3' miRNA: 3'- cuGUGGCAUa---GuCGAUGGCGGCGuug -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 161635 | 0.72 | 0.767681 |
Target: 5'- cGGCGCCGcUGccgggccUCGGCcGCCGCCGCcACc -3' miRNA: 3'- -CUGUGGC-AU-------AGUCGaUGGCGGCGuUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 202085 | 0.73 | 0.740081 |
Target: 5'- gGACGCCGagcugagCAaccacgccaaccGCUGCCGCCGCAAg -3' miRNA: 3'- -CUGUGGCaua----GU------------CGAUGGCGGCGUUg -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 183784 | 0.74 | 0.670674 |
Target: 5'- cGC-CCGUGUCGgaagaagaccccGCUGCCGCCGCcACc -3' miRNA: 3'- cUGuGGCAUAGU------------CGAUGGCGGCGuUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 140571 | 0.8 | 0.376337 |
Target: 5'- -cUACCGUcgucGUCGGCcgACCGCCGCGACc -3' miRNA: 3'- cuGUGGCA----UAGUCGa-UGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 196215 | 0.73 | 0.740081 |
Target: 5'- aACGCCGc-UCGGagcACCGCCGCAGCc -3' miRNA: 3'- cUGUGGCauAGUCga-UGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 171116 | 0.8 | 0.384522 |
Target: 5'- aGGCGCCauccgcuUCGGCcGCCGCCGCAACg -3' miRNA: 3'- -CUGUGGcau----AGUCGaUGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 38316 | 0.74 | 0.670674 |
Target: 5'- cGGCGCCGccgCuGCUGCCGCUGCcGCc -3' miRNA: 3'- -CUGUGGCauaGuCGAUGGCGGCGuUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 213082 | 0.73 | 0.749697 |
Target: 5'- uGGCGCCGcugccgcGUCGGgUACCGCUGCcGCa -3' miRNA: 3'- -CUGUGGCa------UAGUCgAUGGCGGCGuUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 2292 | 0.72 | 0.777901 |
Target: 5'- gGGCGCCGUGuUCGGgUACUGcCCGCugGACg -3' miRNA: 3'- -CUGUGGCAU-AGUCgAUGGC-GGCG--UUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 131485 | 0.78 | 0.454064 |
Target: 5'- uACGCCGUggCGcGCaACCGCCGCGACu -3' miRNA: 3'- cUGUGGCAuaGU-CGaUGGCGGCGUUG- -5' |
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29795 | 5' | -54.2 | NC_006273.1 | + | 80748 | 0.75 | 0.630139 |
Target: 5'- aACGCCGUcUCGucGUUGCCGCCGguGCu -3' miRNA: 3'- cUGUGGCAuAGU--CGAUGGCGGCguUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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