miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 160114 0.71 0.813669
Target:  5'- -uCACCugGUAUgaGGCgGCCGCCGCGGCg -3'
miRNA:   3'- cuGUGG--CAUAg-UCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 103025 0.72 0.777901
Target:  5'- aACGCCGcggCGGCaGCgGCCGCGGCu -3'
miRNA:   3'- cUGUGGCauaGUCGaUGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 183784 0.74 0.670674
Target:  5'- cGC-CCGUGUCGgaagaagaccccGCUGCCGCCGCcACc -3'
miRNA:   3'- cUGuGGCAUAGU------------CGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 131485 0.78 0.454064
Target:  5'- uACGCCGUggCGcGCaACCGCCGCGACu -3'
miRNA:   3'- cUGUGGCAuaGU-CGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 136692 0.7 0.876966
Target:  5'- cGACgACCGgc-CGGUcGCCGCCGCcGCg -3'
miRNA:   3'- -CUG-UGGCauaGUCGaUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 168607 0.71 0.830614
Target:  5'- --gGCCaGUGUCAGC-GCCgaGCCGCGGCu -3'
miRNA:   3'- cugUGG-CAUAGUCGaUGG--CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 38575 0.72 0.768617
Target:  5'- aGCACCGcgccCAGCgccaGCCaGCCGCAGCa -3'
miRNA:   3'- cUGUGGCaua-GUCGa---UGG-CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 171116 0.8 0.384522
Target:  5'- aGGCGCCauccgcuUCGGCcGCCGCCGCAACg -3'
miRNA:   3'- -CUGUGGcau----AGUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 42267 0.71 0.822226
Target:  5'- cGACACCGccGUC-GUUACCGCCGgaGACc -3'
miRNA:   3'- -CUGUGGCa-UAGuCGAUGGCGGCg-UUG- -5'
29795 5' -54.2 NC_006273.1 + 140571 0.8 0.376337
Target:  5'- -cUACCGUcgucGUCGGCcgACCGCCGCGACc -3'
miRNA:   3'- cuGUGGCA----UAGUCGa-UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 2292 0.72 0.777901
Target:  5'- gGGCGCCGUGuUCGGgUACUGcCCGCugGACg -3'
miRNA:   3'- -CUGUGGCAU-AGUCgAUGGC-GGCG--UUG- -5'
29795 5' -54.2 NC_006273.1 + 1366 0.71 0.813669
Target:  5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3'
miRNA:   3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 196215 0.73 0.740081
Target:  5'- aACGCCGc-UCGGagcACCGCCGCAGCc -3'
miRNA:   3'- cUGUGGCauAGUCga-UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68064 0.74 0.680751
Target:  5'- -cCGCCGUGgccgCcGCUGCCGCCGCu-- -3'
miRNA:   3'- cuGUGGCAUa---GuCGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 156047 0.75 0.640291
Target:  5'- uGAUGCCGUGUCuGCccAUCGCCGcCAGCa -3'
miRNA:   3'- -CUGUGGCAUAGuCGa-UGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 167025 0.78 0.454064
Target:  5'- uGCGCCGUGcUCAGCUGCuCGUCGCGu- -3'
miRNA:   3'- cUGUGGCAU-AGUCGAUG-GCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 96472 0.7 0.883972
Target:  5'- -cCACCGUGUUc-CUGgUGCCGCGACg -3'
miRNA:   3'- cuGUGGCAUAGucGAUgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 85411 0.7 0.883281
Target:  5'- aGACGCCGUAgccgauaUCGGCcGCCaacGCCGUAucGCg -3'
miRNA:   3'- -CUGUGGCAU-------AGUCGaUGG---CGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 8420 0.71 0.854681
Target:  5'- uGGCGCCGUG-CAGUUGCCGCgCcCAAa -3'
miRNA:   3'- -CUGUGGCAUaGUCGAUGGCG-GcGUUg -5'
29795 5' -54.2 NC_006273.1 + 227732 0.71 0.830614
Target:  5'- --gGCCGacaaaUcgCAGCUgucuucGCCGCCGCAGCu -3'
miRNA:   3'- cugUGGC-----AuaGUCGA------UGGCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.