miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 234772 0.7 0.869746
Target:  5'- aGCGCCGUGgaCAGCaaGCCGCagaaGCGGCg -3'
miRNA:   3'- cUGUGGCAUa-GUCGa-UGGCGg---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 38575 0.72 0.768617
Target:  5'- aGCACCGcgccCAGCgccaGCCaGCCGCAGCa -3'
miRNA:   3'- cUGUGGCaua-GUCGa---UGG-CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 171116 0.8 0.384522
Target:  5'- aGGCGCCauccgcuUCGGCcGCCGCCGCAACg -3'
miRNA:   3'- -CUGUGGcau----AGUCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 185888 0.7 0.869746
Target:  5'- aACGCCGUuau-GCUcuACCGCgGCGACg -3'
miRNA:   3'- cUGUGGCAuaguCGA--UGGCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 140571 0.8 0.376337
Target:  5'- -cUACCGUcgucGUCGGCcgACCGCCGCGACc -3'
miRNA:   3'- cuGUGGCA----UAGUCGa-UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 130255 0.69 0.926679
Target:  5'- cGAcCGCCGguggcGUCGGUggugcaACCGUCGCAGCc -3'
miRNA:   3'- -CU-GUGGCa----UAGUCGa-----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 167025 0.78 0.454064
Target:  5'- uGCGCCGUGcUCAGCUGCuCGUCGCGu- -3'
miRNA:   3'- cUGUGGCAU-AGUCGAUG-GCGGCGUug -5'
29795 5' -54.2 NC_006273.1 + 197655 0.69 0.921274
Target:  5'- aGACGCUGcGUCGGUUucuaCGCgGCGACa -3'
miRNA:   3'- -CUGUGGCaUAGUCGAug--GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 181455 0.69 0.903656
Target:  5'- uGACGCucgaCGUGUacuGCUGCCGCCagaccuccaGCAACa -3'
miRNA:   3'- -CUGUG----GCAUAgu-CGAUGGCGG---------CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 43579 0.7 0.890758
Target:  5'- aGCGCCGUA--GGCaAgUGCCGCGGCg -3'
miRNA:   3'- cUGUGGCAUagUCGaUgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 118399 0.7 0.890758
Target:  5'- cGACG-CGUcgaCAGCagUGCUGCCGCAGCg -3'
miRNA:   3'- -CUGUgGCAua-GUCG--AUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 96472 0.7 0.883972
Target:  5'- -cCACCGUGUUc-CUGgUGCCGCGACg -3'
miRNA:   3'- cuGUGGCAUAGucGAUgGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 85411 0.7 0.883281
Target:  5'- aGACGCCGUAgccgauaUCGGCcGCCaacGCCGUAucGCg -3'
miRNA:   3'- -CUGUGGCAU-------AGUCGaUGG---CGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 105909 0.71 0.838823
Target:  5'- cGACGCCucgcgcUCAcGCcGCCGCCGCGAUg -3'
miRNA:   3'- -CUGUGGcau---AGU-CGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 42267 0.71 0.822226
Target:  5'- cGACACCGccGUC-GUUACCGCCGgaGACc -3'
miRNA:   3'- -CUGUGGCa-UAGuCGAUGGCGGCg-UUG- -5'
29795 5' -54.2 NC_006273.1 + 160114 0.71 0.813669
Target:  5'- -uCACCugGUAUgaGGCgGCCGCCGCGGCg -3'
miRNA:   3'- cuGUGG--CAUAg-UCGaUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 103025 0.72 0.777901
Target:  5'- aACGCCGcggCGGCaGCgGCCGCGGCu -3'
miRNA:   3'- cUGUGGCauaGUCGaUGgCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 196215 0.73 0.740081
Target:  5'- aACGCCGc-UCGGagcACCGCCGCAGCc -3'
miRNA:   3'- cUGUGGCauAGUCga-UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68064 0.74 0.680751
Target:  5'- -cCGCCGUGgccgCcGCUGCCGCCGCu-- -3'
miRNA:   3'- cuGUGGCAUa---GuCGAUGGCGGCGuug -5'
29795 5' -54.2 NC_006273.1 + 156047 0.75 0.640291
Target:  5'- uGAUGCCGUGUCuGCccAUCGCCGcCAGCa -3'
miRNA:   3'- -CUGUGGCAUAGuCGa-UGGCGGC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.