miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 5' -54.2 NC_006273.1 + 85411 0.7 0.883281
Target:  5'- aGACGCCGUAgccgauaUCGGCcGCCaacGCCGUAucGCg -3'
miRNA:   3'- -CUGUGGCAU-------AGUCGaUGG---CGGCGU--UG- -5'
29795 5' -54.2 NC_006273.1 + 30014 0.7 0.890758
Target:  5'- aGGCACCGcgaCAGCUACCGaggCGCuguACa -3'
miRNA:   3'- -CUGUGGCauaGUCGAUGGCg--GCGu--UG- -5'
29795 5' -54.2 NC_006273.1 + 73693 0.77 0.529881
Target:  5'- gGAgGCCGUGg-AGCgagUGCCGCCGCAGCc -3'
miRNA:   3'- -CUgUGGCAUagUCG---AUGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 39454 0.75 0.650435
Target:  5'- gGACGCCGUGgccCGGCgucGCCGUaggCGCAGCa -3'
miRNA:   3'- -CUGUGGCAUa--GUCGa--UGGCG---GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 159934 0.73 0.730372
Target:  5'- --uGCCGgcgaCGGCU-CCGCCGCAGCu -3'
miRNA:   3'- cugUGGCaua-GUCGAuGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 213082 0.73 0.749697
Target:  5'- uGGCGCCGcugccgcGUCGGgUACCGCUGCcGCa -3'
miRNA:   3'- -CUGUGGCa------UAGUCgAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 155420 0.72 0.787057
Target:  5'- aACGCCGcUAUCAucuCUACCGCCGCcguGCc -3'
miRNA:   3'- cUGUGGC-AUAGUc--GAUGGCGGCGu--UG- -5'
29795 5' -54.2 NC_006273.1 + 1366 0.71 0.813669
Target:  5'- gGAC-CUGcGUCAGCUGUCGCCGCGGg -3'
miRNA:   3'- -CUGuGGCaUAGUCGAUGGCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 168607 0.71 0.830614
Target:  5'- --gGCCaGUGUCAGC-GCCgaGCCGCGGCu -3'
miRNA:   3'- cugUGG-CAUAGUCGaUGG--CGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 68863 0.71 0.846848
Target:  5'- cGAcCACCGUuacCAguaccaccGCUGCCGCCGCcACg -3'
miRNA:   3'- -CU-GUGGCAua-GU--------CGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 162588 0.67 0.957983
Target:  5'- uGCGCCGUcugCGGCUcuacCCGCCcgaGCGGCu -3'
miRNA:   3'- cUGUGGCAua-GUCGAu---GGCGG---CGUUG- -5'
29795 5' -54.2 NC_006273.1 + 177015 0.67 0.954197
Target:  5'- --aAUUGUAUCGGUUGCCGCgGCu-- -3'
miRNA:   3'- cugUGGCAUAGUCGAUGGCGgCGuug -5'
29795 5' -54.2 NC_006273.1 + 233534 0.7 0.890758
Target:  5'- cGGCAgCGUacgacguuccaGUCAGCgagGCCGUCGCGuugGCg -3'
miRNA:   3'- -CUGUgGCA-----------UAGUCGa--UGGCGGCGU---UG- -5'
29795 5' -54.2 NC_006273.1 + 63822 0.69 0.897321
Target:  5'- -cCACCGg--CAGCgGCaCGCCGCGAg -3'
miRNA:   3'- cuGUGGCauaGUCGaUG-GCGGCGUUg -5'
29795 5' -54.2 NC_006273.1 + 197655 0.69 0.921274
Target:  5'- aGACGCUGcGUCGGUUucuaCGCgGCGACa -3'
miRNA:   3'- -CUGUGGCaUAGUCGAug--GCGgCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 130255 0.69 0.926679
Target:  5'- cGAcCGCCGguggcGUCGGUggugcaACCGUCGCAGCc -3'
miRNA:   3'- -CU-GUGGCa----UAGUCGa-----UGGCGGCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 101877 0.68 0.941482
Target:  5'- -uCAgCGUAgUCGGCUaacaaagcccggGCCGCCGcCAGCg -3'
miRNA:   3'- cuGUgGCAU-AGUCGA------------UGGCGGC-GUUG- -5'
29795 5' -54.2 NC_006273.1 + 72604 0.68 0.94595
Target:  5'- cGACAUgCGg--CcGCUGCCGCCGCcACc -3'
miRNA:   3'- -CUGUG-GCauaGuCGAUGGCGGCGuUG- -5'
29795 5' -54.2 NC_006273.1 + 180052 0.68 0.950187
Target:  5'- cGGCGCCGUcuUCGGCgugcaucCCGauaCGCGGCa -3'
miRNA:   3'- -CUGUGGCAu-AGUCGau-----GGCg--GCGUUG- -5'
29795 5' -54.2 NC_006273.1 + 90594 0.67 0.954197
Target:  5'- cGGCACCGgGUgugacugcaaCAGCgaggccacgGCCGCCGCGu- -3'
miRNA:   3'- -CUGUGGCaUA----------GUCGa--------UGGCGGCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.