miRNA display CGI


Results 1 - 20 of 705 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29796 3' -62.5 NC_006273.1 + 153953 0.66 0.768604
Target:  5'- aACGCCGCGugcccugcaucaucuGCGuCGGuUCGCCcacGCAGaCCg -3'
miRNA:   3'- -UGCGGCGC---------------UGUuGCC-GGCGG---CGUC-GG- -5'
29796 3' -62.5 NC_006273.1 + 65497 0.66 0.768604
Target:  5'- cCGCCuccuccucccccucaGCGAUAGCGGCgGCCucuucuucguccGCGGUa -3'
miRNA:   3'- uGCGG---------------CGCUGUUGCCGgCGG------------CGUCGg -5'
29796 3' -62.5 NC_006273.1 + 214528 0.66 0.768604
Target:  5'- uACGCgGCuuuCAgagcacauuuggaagAUGGCCGCCGUcagguguuGGCCa -3'
miRNA:   3'- -UGCGgCGcu-GU---------------UGCCGGCGGCG--------UCGG- -5'
29796 3' -62.5 NC_006273.1 + 68756 0.66 0.768604
Target:  5'- cACGCCGCGGgucgacaugguccaGGCGGUgGaaGCGGUCu -3'
miRNA:   3'- -UGCGGCGCUg-------------UUGCCGgCggCGUCGG- -5'
29796 3' -62.5 NC_006273.1 + 62709 0.66 0.765101
Target:  5'- uACGCCGCGACGcgugcaACGGCUacuagaucuGaCGCAGa- -3'
miRNA:   3'- -UGCGGCGCUGU------UGCCGG---------CgGCGUCgg -5'
29796 3' -62.5 NC_006273.1 + 35383 0.66 0.765101
Target:  5'- gGCGCCGgGACucuggugcuAUGGCUGCUcaauGCCa -3'
miRNA:   3'- -UGCGGCgCUGu--------UGCCGGCGGcgu-CGG- -5'
29796 3' -62.5 NC_006273.1 + 111856 0.66 0.765101
Target:  5'- gACGCCGaCGaucaguccguGCggUGGCaCGCCacccaCAGCCu -3'
miRNA:   3'- -UGCGGC-GC----------UGuuGCCG-GCGGc----GUCGG- -5'
29796 3' -62.5 NC_006273.1 + 87654 0.66 0.765101
Target:  5'- cUGCUGUGuCggUGGCUGCUGUuGCUg -3'
miRNA:   3'- uGCGGCGCuGuuGCCGGCGGCGuCGG- -5'
29796 3' -62.5 NC_006273.1 + 105391 0.66 0.765101
Target:  5'- aGC-CCGUGcaACAGCaGCCGCCGgucgAGCCc -3'
miRNA:   3'- -UGcGGCGC--UGUUGcCGGCGGCg---UCGG- -5'
29796 3' -62.5 NC_006273.1 + 185876 0.66 0.765101
Target:  5'- uUGCCacGCGucgaAGCGGUCGCaGCAGCg -3'
miRNA:   3'- uGCGG--CGCug--UUGCCGGCGgCGUCGg -5'
29796 3' -62.5 NC_006273.1 + 47957 0.66 0.765101
Target:  5'- uCGUCGCgGAUAACaGaCCGCCGC-GCg -3'
miRNA:   3'- uGCGGCG-CUGUUGcC-GGCGGCGuCGg -5'
29796 3' -62.5 NC_006273.1 + 61192 0.66 0.765101
Target:  5'- gAUGCCcaGCGA-GACGGUCuugaCGCAGCCc -3'
miRNA:   3'- -UGCGG--CGCUgUUGCCGGcg--GCGUCGG- -5'
29796 3' -62.5 NC_006273.1 + 233967 0.66 0.764222
Target:  5'- -gGCCGCGggguccaccucguGCAccACGGUCGCCacCAGCa -3'
miRNA:   3'- ugCGGCGC-------------UGU--UGCCGGCGGc-GUCGg -5'
29796 3' -62.5 NC_006273.1 + 39074 0.66 0.764222
Target:  5'- -gGCCGCGggguccaccucguGCAccACGGUCGCCacCAGCa -3'
miRNA:   3'- ugCGGCGC-------------UGU--UGCCGGCGGc-GUCGg -5'
29796 3' -62.5 NC_006273.1 + 151187 0.66 0.762462
Target:  5'- cACGCCGCGGaucaucagggccucCAuuucgaaauCGGCCGacaCGCucugGGCCg -3'
miRNA:   3'- -UGCGGCGCU--------------GUu--------GCCGGCg--GCG----UCGG- -5'
29796 3' -62.5 NC_006273.1 + 66308 0.66 0.762462
Target:  5'- gACGCCaGCGAucugaacCGACGcGaaauucugaaagCGCUGCAGCCg -3'
miRNA:   3'- -UGCGG-CGCU-------GUUGC-Cg-----------GCGGCGUCGG- -5'
29796 3' -62.5 NC_006273.1 + 119804 0.66 0.756271
Target:  5'- gGCGCCaguuCGGCGuuACGGUCaGUCGCAcgGCCc -3'
miRNA:   3'- -UGCGGc---GCUGU--UGCCGG-CGGCGU--CGG- -5'
29796 3' -62.5 NC_006273.1 + 215420 0.66 0.756271
Target:  5'- gACGCCGUGACAGCca-CGCUGguaAGCa -3'
miRNA:   3'- -UGCGGCGCUGUUGccgGCGGCg--UCGg -5'
29796 3' -62.5 NC_006273.1 + 61265 0.66 0.756271
Target:  5'- -aGCCaCuGCAGCGcGgCGCgCGCGGCCg -3'
miRNA:   3'- ugCGGcGcUGUUGC-CgGCG-GCGUCGG- -5'
29796 3' -62.5 NC_006273.1 + 31236 0.66 0.756271
Target:  5'- uGCGggGCGAC-ACGGUaCGCCggGUAGCCg -3'
miRNA:   3'- -UGCggCGCUGuUGCCG-GCGG--CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.