miRNA display CGI


Results 1 - 20 of 579 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29796 5' -50 NC_006273.1 + 56398 0.66 0.999434
Target:  5'- gGCGAUAugGGCucGCGuuuugauaaccuACcugguGUCGCGGCg -3'
miRNA:   3'- -CGUUGUugUCGu-CGU------------UGu----CAGCGUCG- -5'
29796 5' -50 NC_006273.1 + 118054 0.66 0.999434
Target:  5'- -aAGCGACGGCGGUGAUuc-CGCGGg -3'
miRNA:   3'- cgUUGUUGUCGUCGUUGucaGCGUCg -5'
29796 5' -50 NC_006273.1 + 111210 0.66 0.999434
Target:  5'- -aGACGA-GGCGGCGGCGGUgGCGu- -3'
miRNA:   3'- cgUUGUUgUCGUCGUUGUCAgCGUcg -5'
29796 5' -50 NC_006273.1 + 870 0.66 0.999434
Target:  5'- -uGGCGGCGGguGUuucuACGGUguuugUGCGGCg -3'
miRNA:   3'- cgUUGUUGUCguCGu---UGUCA-----GCGUCG- -5'
29796 5' -50 NC_006273.1 + 80212 0.66 0.999434
Target:  5'- aCGGCGuccuGCAGaCAGUAACGGccuaccugggCGCGGCc -3'
miRNA:   3'- cGUUGU----UGUC-GUCGUUGUCa---------GCGUCG- -5'
29796 5' -50 NC_006273.1 + 124109 0.66 0.999434
Target:  5'- -gAGCGGCGGCGuCGACAGagcucggcguUgGCGGCg -3'
miRNA:   3'- cgUUGUUGUCGUcGUUGUC----------AgCGUCG- -5'
29796 5' -50 NC_006273.1 + 47294 0.66 0.999434
Target:  5'- cGCGGCAACA----CAGCAGUC-CGGCc -3'
miRNA:   3'- -CGUUGUUGUcgucGUUGUCAGcGUCG- -5'
29796 5' -50 NC_006273.1 + 172664 0.66 0.999434
Target:  5'- uGCGuCAGaucUAGUAGCcguuGCAcgcGUCGCGGCg -3'
miRNA:   3'- -CGUuGUU---GUCGUCGu---UGU---CAGCGUCG- -5'
29796 5' -50 NC_006273.1 + 118021 0.66 0.999434
Target:  5'- aUAGCGACGGUggaAGUGGCGGgcaCGCGGg -3'
miRNA:   3'- cGUUGUUGUCG---UCGUUGUCa--GCGUCg -5'
29796 5' -50 NC_006273.1 + 140388 0.66 0.999434
Target:  5'- cCAGCAACaAGguGCAACAcGUgGaAGCc -3'
miRNA:   3'- cGUUGUUG-UCguCGUUGU-CAgCgUCG- -5'
29796 5' -50 NC_006273.1 + 188348 0.66 0.999434
Target:  5'- ----aGGCAGC-GCAACGGUCGguuGCg -3'
miRNA:   3'- cguugUUGUCGuCGUUGUCAGCgu-CG- -5'
29796 5' -50 NC_006273.1 + 35510 0.66 0.999434
Target:  5'- cGC-GCAGCAGauuGGC-GCGGUCguGCAGUa -3'
miRNA:   3'- -CGuUGUUGUCg--UCGuUGUCAG--CGUCG- -5'
29796 5' -50 NC_006273.1 + 30670 0.66 0.999434
Target:  5'- gGCGGCuuccuGCGGcCGGCcGCGGUgccgGCGGCu -3'
miRNA:   3'- -CGUUGu----UGUC-GUCGuUGUCAg---CGUCG- -5'
29796 5' -50 NC_006273.1 + 40808 0.66 0.999434
Target:  5'- -uGGCGGCGGguGUuucuACGGUguuugUGCGGCg -3'
miRNA:   3'- cgUUGUUGUCguCGu---UGUCA-----GCGUCG- -5'
29796 5' -50 NC_006273.1 + 164653 0.66 0.999409
Target:  5'- cCAACAcCAGCcgacuguguccuGUucgaacguggagGGCGGUCGCAGCa -3'
miRNA:   3'- cGUUGUuGUCGu-----------CG------------UUGUCAGCGUCG- -5'
29796 5' -50 NC_006273.1 + 146433 0.66 0.999357
Target:  5'- cGCGgagGCGACGGCuuuccaagcugucguGGUGACugagCGCAGCg -3'
miRNA:   3'- -CGU---UGUUGUCG---------------UCGUUGuca-GCGUCG- -5'
29796 5' -50 NC_006273.1 + 34236 0.66 0.999357
Target:  5'- cGCGGCAcagggccgccggcagGCAGCGGCcgAugAGuUCGC-GCu -3'
miRNA:   3'- -CGUUGU---------------UGUCGUCG--UugUC-AGCGuCG- -5'
29796 5' -50 NC_006273.1 + 166127 0.66 0.999302
Target:  5'- aGCAuagACGAC-GCAG--GCGGUCGC-GCa -3'
miRNA:   3'- -CGU---UGUUGuCGUCguUGUCAGCGuCG- -5'
29796 5' -50 NC_006273.1 + 57818 0.66 0.999302
Target:  5'- aGCGACuuuaGACGuCAG-AACcGUCGCGGCg -3'
miRNA:   3'- -CGUUG----UUGUcGUCgUUGuCAGCGUCG- -5'
29796 5' -50 NC_006273.1 + 36847 0.66 0.999302
Target:  5'- gGCAGgGACAcGCGcuacGUAGcCGGUCGCGGa -3'
miRNA:   3'- -CGUUgUUGU-CGU----CGUU-GUCAGCGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.