miRNA display CGI


Results 1 - 20 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29796 5' -50 NC_006273.1 + 11 0.69 0.990035
Target:  5'- cGCAcCGGCGGCGGUcgggguguguCGGgggCGCGGCg -3'
miRNA:   3'- -CGUuGUUGUCGUCGuu--------GUCa--GCGUCG- -5'
29796 5' -50 NC_006273.1 + 76 0.67 0.998474
Target:  5'- uGUGugGACGGCgacGGCGACuAGUUGCGuGUg -3'
miRNA:   3'- -CGUugUUGUCG---UCGUUG-UCAGCGU-CG- -5'
29796 5' -50 NC_006273.1 + 120 0.69 0.98698
Target:  5'- aCGGCGACGGCgaauaaaAGCGACG--UGCGGCg -3'
miRNA:   3'- cGUUGUUGUCG-------UCGUUGUcaGCGUCG- -5'
29796 5' -50 NC_006273.1 + 730 0.69 0.988659
Target:  5'- gGCGGCGcCAGCaAGCGccauACAcGUCGCuGCc -3'
miRNA:   3'- -CGUUGUuGUCG-UCGU----UGU-CAGCGuCG- -5'
29796 5' -50 NC_006273.1 + 870 0.66 0.999434
Target:  5'- -uGGCGGCGGguGUuucuACGGUguuugUGCGGCg -3'
miRNA:   3'- cgUUGUUGUCguCGu---UGUCA-----GCGUCG- -5'
29796 5' -50 NC_006273.1 + 897 0.7 0.978998
Target:  5'- cGCAACGGCAugucGCcGCGccccccgccccuCGGUCGCGGCc -3'
miRNA:   3'- -CGUUGUUGU----CGuCGUu-----------GUCAGCGUCG- -5'
29796 5' -50 NC_006273.1 + 921 0.67 0.998474
Target:  5'- cGCAGCGcuucgcuuuucGgGGCGGCGACGG-CGUuguuuucgGGCg -3'
miRNA:   3'- -CGUUGU-----------UgUCGUCGUUGUCaGCG--------UCG- -5'
29796 5' -50 NC_006273.1 + 1109 0.7 0.981426
Target:  5'- gGCAACAACAGCaacuuuuGGC-ACGGccCGgAGCg -3'
miRNA:   3'- -CGUUGUUGUCG-------UCGuUGUCa-GCgUCG- -5'
29796 5' -50 NC_006273.1 + 1151 0.69 0.98698
Target:  5'- gGCGGgGACGGUGGUgagGACGGggacaggggcauuUCGCGGCg -3'
miRNA:   3'- -CGUUgUUGUCGUCG---UUGUC-------------AGCGUCG- -5'
29796 5' -50 NC_006273.1 + 1222 0.73 0.928512
Target:  5'- cGCGGCGuuucuggccaACAGCAcgggccgcgccaugcGCAAgUGGUCGCAGCg -3'
miRNA:   3'- -CGUUGU----------UGUCGU---------------CGUU-GUCAGCGUCG- -5'
29796 5' -50 NC_006273.1 + 1242 0.7 0.983445
Target:  5'- -gGACucuuGCGGCGGgGACGGggacgggggccuuUCGCGGCg -3'
miRNA:   3'- cgUUGu---UGUCGUCgUUGUC-------------AGCGUCG- -5'
29796 5' -50 NC_006273.1 + 1350 0.66 0.998734
Target:  5'- aCGGCGugGGC-GCGACGGaccugCGuCAGCu -3'
miRNA:   3'- cGUUGUugUCGuCGUUGUCa----GC-GUCG- -5'
29796 5' -50 NC_006273.1 + 1663 0.7 0.981636
Target:  5'- --cACAACAuaGGCGAgGG-CGCAGCg -3'
miRNA:   3'- cguUGUUGUcgUCGUUgUCaGCGUCG- -5'
29796 5' -50 NC_006273.1 + 1717 0.73 0.931687
Target:  5'- cGCcGCGGCGGUGGCGACugGGcCGaCAGCg -3'
miRNA:   3'- -CGuUGUUGUCGUCGUUG--UCaGC-GUCG- -5'
29796 5' -50 NC_006273.1 + 1757 0.67 0.996933
Target:  5'- gGC-ACGACGGUGGCAcuACAGaCGCcgggaaGGCg -3'
miRNA:   3'- -CGuUGUUGUCGUCGU--UGUCaGCG------UCG- -5'
29796 5' -50 NC_006273.1 + 1999 0.66 0.999144
Target:  5'- cCAGCGGCgAGCGGCAcggagACGGagGCcGCc -3'
miRNA:   3'- cGUUGUUG-UCGUCGU-----UGUCagCGuCG- -5'
29796 5' -50 NC_006273.1 + 2166 0.92 0.152086
Target:  5'- cGCGACGGCGGCGGCAGCGG-CaGCAGCg -3'
miRNA:   3'- -CGUUGUUGUCGUCGUUGUCaG-CGUCG- -5'
29796 5' -50 NC_006273.1 + 2426 0.66 0.999035
Target:  5'- cGCGGCGGCuGCuGCccgagcuggaccgcgAGCAGUgGgAGCg -3'
miRNA:   3'- -CGUUGUUGuCGuCG---------------UUGUCAgCgUCG- -5'
29796 5' -50 NC_006273.1 + 4583 0.77 0.790436
Target:  5'- gGCGACGGCAGCGGUggUggcgcugggGGUgGCGGUa -3'
miRNA:   3'- -CGUUGUUGUCGUCGuuG---------UCAgCGUCG- -5'
29796 5' -50 NC_006273.1 + 7626 0.67 0.998474
Target:  5'- gGCGACGuuaacugcuACAGCuGCGGCGG-CGaagaCAGCu -3'
miRNA:   3'- -CGUUGU---------UGUCGuCGUUGUCaGC----GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.