miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29799 3' -52.5 NC_006273.1 + 34763 0.66 0.996284
Target:  5'- cUCGGUGCCC-CGgccccUGAaUGUGGUGg- -3'
miRNA:   3'- -AGCCAUGGGuGCa----ACUaGUACCACgc -5'
29799 3' -52.5 NC_006273.1 + 31845 0.66 0.993961
Target:  5'- -gGGUGCCCACGgacuugGAcCAucucacucugcauuUGGUGCc -3'
miRNA:   3'- agCCAUGGGUGCaa----CUaGU--------------ACCACGc -5'
29799 3' -52.5 NC_006273.1 + 39077 0.67 0.991293
Target:  5'- aUCGGUuuucuGCacaCACaacUGGUCAUGGUGCc -3'
miRNA:   3'- -AGCCA-----UGg--GUGca-ACUAGUACCACGc -5'
29799 3' -52.5 NC_006273.1 + 116105 0.67 0.988636
Target:  5'- gUGGUccgagacACCCAgGUUGuUCAUGGUuucGCGc -3'
miRNA:   3'- aGCCA-------UGGGUgCAACuAGUACCA---CGC- -5'
29799 3' -52.5 NC_006273.1 + 178692 0.68 0.98398
Target:  5'- gUGGUGgUCAUGUUGAUCccGGUcGUGg -3'
miRNA:   3'- aGCCAUgGGUGCAACUAGuaCCA-CGC- -5'
29799 3' -52.5 NC_006273.1 + 183303 0.68 0.98398
Target:  5'- uUCGGUgcgGCCCACGc--GUCAgcUGGUGUu -3'
miRNA:   3'- -AGCCA---UGGGUGCaacUAGU--ACCACGc -5'
29799 3' -52.5 NC_006273.1 + 137711 0.68 0.98398
Target:  5'- gUGGUGCUCAUGaggugUGGugUCgAUGGUGCGu -3'
miRNA:   3'- aGCCAUGGGUGCa----ACU--AG-UACCACGC- -5'
29799 3' -52.5 NC_006273.1 + 234121 0.68 0.982858
Target:  5'- -aGcGUGCCCGCGUcgcgcugcgaccacuUGcgCAUGGcGCGg -3'
miRNA:   3'- agC-CAUGGGUGCA---------------ACuaGUACCaCGC- -5'
29799 3' -52.5 NC_006273.1 + 39228 0.68 0.982858
Target:  5'- -aGcGUGCCCGCGUcgcgcugcgaccacuUGcgCAUGGcGCGg -3'
miRNA:   3'- agC-CAUGGGUGCA---------------ACuaGUACCaCGC- -5'
29799 3' -52.5 NC_006273.1 + 34379 0.68 0.982078
Target:  5'- aCGGUGuCgCCAcCGUUGA-CGUGGgcgGCGa -3'
miRNA:   3'- aGCCAU-G-GGU-GCAACUaGUACCa--CGC- -5'
29799 3' -52.5 NC_006273.1 + 162764 0.69 0.969946
Target:  5'- gUGGUGCUgGCGgUGGUgGUGGcgGCGg -3'
miRNA:   3'- aGCCAUGGgUGCaACUAgUACCa-CGC- -5'
29799 3' -52.5 NC_006273.1 + 118710 0.7 0.952844
Target:  5'- gCGGUGCUgAUGggugagGGUCGUGGcGCGg -3'
miRNA:   3'- aGCCAUGGgUGCaa----CUAGUACCaCGC- -5'
29799 3' -52.5 NC_006273.1 + 124055 0.71 0.92494
Target:  5'- gUCGGUacuggcgacACCCAUcaUGGUCGUGGUGg- -3'
miRNA:   3'- -AGCCA---------UGGGUGcaACUAGUACCACgc -5'
29799 3' -52.5 NC_006273.1 + 146264 1.11 0.007979
Target:  5'- aUCGGUACCCACGUUGAUCAUGGUGCGg -3'
miRNA:   3'- -AGCCAUGGGUGCAACUAGUACCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.