Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29799 | 3' | -52.5 | NC_006273.1 | + | 146264 | 1.11 | 0.007979 |
Target: 5'- aUCGGUACCCACGUUGAUCAUGGUGCGg -3' miRNA: 3'- -AGCCAUGGGUGCAACUAGUACCACGC- -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 124055 | 0.71 | 0.92494 |
Target: 5'- gUCGGUacuggcgacACCCAUcaUGGUCGUGGUGg- -3' miRNA: 3'- -AGCCA---------UGGGUGcaACUAGUACCACgc -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 118710 | 0.7 | 0.952844 |
Target: 5'- gCGGUGCUgAUGggugagGGUCGUGGcGCGg -3' miRNA: 3'- aGCCAUGGgUGCaa----CUAGUACCaCGC- -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 162764 | 0.69 | 0.969946 |
Target: 5'- gUGGUGCUgGCGgUGGUgGUGGcgGCGg -3' miRNA: 3'- aGCCAUGGgUGCaACUAgUACCa-CGC- -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 34379 | 0.68 | 0.982078 |
Target: 5'- aCGGUGuCgCCAcCGUUGA-CGUGGgcgGCGa -3' miRNA: 3'- aGCCAU-G-GGU-GCAACUaGUACCa--CGC- -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 234121 | 0.68 | 0.982858 |
Target: 5'- -aGcGUGCCCGCGUcgcgcugcgaccacuUGcgCAUGGcGCGg -3' miRNA: 3'- agC-CAUGGGUGCA---------------ACuaGUACCaCGC- -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 39228 | 0.68 | 0.982858 |
Target: 5'- -aGcGUGCCCGCGUcgcgcugcgaccacuUGcgCAUGGcGCGg -3' miRNA: 3'- agC-CAUGGGUGCA---------------ACuaGUACCaCGC- -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 178692 | 0.68 | 0.98398 |
Target: 5'- gUGGUGgUCAUGUUGAUCccGGUcGUGg -3' miRNA: 3'- aGCCAUgGGUGCAACUAGuaCCA-CGC- -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 183303 | 0.68 | 0.98398 |
Target: 5'- uUCGGUgcgGCCCACGc--GUCAgcUGGUGUu -3' miRNA: 3'- -AGCCA---UGGGUGCaacUAGU--ACCACGc -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 137711 | 0.68 | 0.98398 |
Target: 5'- gUGGUGCUCAUGaggugUGGugUCgAUGGUGCGu -3' miRNA: 3'- aGCCAUGGGUGCa----ACU--AG-UACCACGC- -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 116105 | 0.67 | 0.988636 |
Target: 5'- gUGGUccgagacACCCAgGUUGuUCAUGGUuucGCGc -3' miRNA: 3'- aGCCA-------UGGGUgCAACuAGUACCA---CGC- -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 39077 | 0.67 | 0.991293 |
Target: 5'- aUCGGUuuucuGCacaCACaacUGGUCAUGGUGCc -3' miRNA: 3'- -AGCCA-----UGg--GUGca-ACUAGUACCACGc -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 31845 | 0.66 | 0.993961 |
Target: 5'- -gGGUGCCCACGgacuugGAcCAucucacucugcauuUGGUGCc -3' miRNA: 3'- agCCAUGGGUGCaa----CUaGU--------------ACCACGc -5' |
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29799 | 3' | -52.5 | NC_006273.1 | + | 34763 | 0.66 | 0.996284 |
Target: 5'- cUCGGUGCCC-CGgccccUGAaUGUGGUGg- -3' miRNA: 3'- -AGCCAUGGGuGCa----ACUaGUACCACgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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