miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29799 5' -59 NC_006273.1 + 1797 0.66 0.890777
Target:  5'- aGCCGAUggugCUGCUggGCGCGuGGCAGGa -3'
miRNA:   3'- -UGGCUGgguaGAUGG--CGCGC-CCGUUC- -5'
29799 5' -59 NC_006273.1 + 187193 0.66 0.890777
Target:  5'- gGCCGGCCC-UCggGgUGCGgGuGGCGGGc -3'
miRNA:   3'- -UGGCUGGGuAGa-UgGCGCgC-CCGUUC- -5'
29799 5' -59 NC_006273.1 + 149205 0.66 0.890777
Target:  5'- gGCCGGCCUuuuguggguUCUGUCGCGUGGccaccGCGAGu -3'
miRNA:   3'- -UGGCUGGGu--------AGAUGGCGCGCC-----CGUUC- -5'
29799 5' -59 NC_006273.1 + 192660 0.66 0.890777
Target:  5'- -gCGGCUCGUC-GCCGUGUGGcGCGGc -3'
miRNA:   3'- ugGCUGGGUAGaUGGCGCGCC-CGUUc -5'
29799 5' -59 NC_006273.1 + 196689 0.66 0.890777
Target:  5'- aGCCGAUggugCUGCUggGCGCGuGGCAGGa -3'
miRNA:   3'- -UGGCUGgguaGAUGG--CGCGC-CCGUUC- -5'
29799 5' -59 NC_006273.1 + 31468 0.66 0.884269
Target:  5'- uACCG-CCCA-CUACaccuCGCGCGGcGCGc- -3'
miRNA:   3'- -UGGCuGGGUaGAUG----GCGCGCC-CGUuc -5'
29799 5' -59 NC_006273.1 + 152068 0.66 0.884269
Target:  5'- cGCCGgguccACCCGgaccaCGCGCGGGUAGu -3'
miRNA:   3'- -UGGC-----UGGGUagaugGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 40521 0.66 0.884269
Target:  5'- -gCGACCCGgcgcgCUACCGCucaCGGGgacCGAGg -3'
miRNA:   3'- ugGCUGGGUa----GAUGGCGc--GCCC---GUUC- -5'
29799 5' -59 NC_006273.1 + 147255 0.66 0.880267
Target:  5'- cGCUGGCCgCGUCgcugauggacaaguuUGCCGCGUugcaGGaGCAGGg -3'
miRNA:   3'- -UGGCUGG-GUAG---------------AUGGCGCG----CC-CGUUC- -5'
29799 5' -59 NC_006273.1 + 197571 0.66 0.877559
Target:  5'- cGCgGAgCCAUCUA-CGCGCcugucaGGGCGAu -3'
miRNA:   3'- -UGgCUgGGUAGAUgGCGCG------CCCGUUc -5'
29799 5' -59 NC_006273.1 + 193928 0.66 0.877559
Target:  5'- uCCGGCCCcgacacCUACCuuCGCGGGUAc- -3'
miRNA:   3'- uGGCUGGGua----GAUGGc-GCGCCCGUuc -5'
29799 5' -59 NC_006273.1 + 183071 0.66 0.877559
Target:  5'- gACUGAUCCAggcguCgGCGuUGGGCAAGg -3'
miRNA:   3'- -UGGCUGGGUagau-GgCGC-GCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 1575 0.66 0.877559
Target:  5'- cGCgCGACgCGgacgagugguuUCggcACgGCGCGGGCGAGg -3'
miRNA:   3'- -UG-GCUGgGU-----------AGa--UGgCGCGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 196468 0.66 0.877559
Target:  5'- cGCgCGACgCGgacgagugguuUCggcACgGCGCGGGCGAGg -3'
miRNA:   3'- -UG-GCUGgGU-----------AGa--UGgCGCGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 117251 0.66 0.875507
Target:  5'- aGCCG-CCgAaaguaacguagaacUCUGCCGCGC-GGCAAa -3'
miRNA:   3'- -UGGCuGGgU--------------AGAUGGCGCGcCCGUUc -5'
29799 5' -59 NC_006273.1 + 115318 0.66 0.863548
Target:  5'- gACCGACUuaaaCAUCaaggGCCGCugcgugGUGGGCGAa -3'
miRNA:   3'- -UGGCUGG----GUAGa---UGGCG------CGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 202628 0.66 0.863548
Target:  5'- cGCCGACUCG-CUGCCGCaguugcuggaGCGcGGCc-- -3'
miRNA:   3'- -UGGCUGGGUaGAUGGCG----------CGC-CCGuuc -5'
29799 5' -59 NC_006273.1 + 227381 0.66 0.863548
Target:  5'- gGCCGAUCgA-CUGCCGCaugagaGCGGGUg-- -3'
miRNA:   3'- -UGGCUGGgUaGAUGGCG------CGCCCGuuc -5'
29799 5' -59 NC_006273.1 + 77999 0.66 0.863548
Target:  5'- cGCCGcCUCAUCUccacccGCCGuCGCaGGCGAc -3'
miRNA:   3'- -UGGCuGGGUAGA------UGGC-GCGcCCGUUc -5'
29799 5' -59 NC_006273.1 + 157165 0.66 0.86138
Target:  5'- uGCUGucGCCCGUCUuucccggcggcgaaACCGCGCGcaaGGaCAAGu -3'
miRNA:   3'- -UGGC--UGGGUAGA--------------UGGCGCGC---CC-GUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.