Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29799 | 5' | -59 | NC_006273.1 | + | 31468 | 0.66 | 0.884269 |
Target: 5'- uACCG-CCCA-CUACaccuCGCGCGGcGCGc- -3' miRNA: 3'- -UGGCuGGGUaGAUG----GCGCGCC-CGUuc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 1575 | 0.66 | 0.877559 |
Target: 5'- cGCgCGACgCGgacgagugguuUCggcACgGCGCGGGCGAGg -3' miRNA: 3'- -UG-GCUGgGU-----------AGa--UGgCGCGCCCGUUC- -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 153625 | 0.66 | 0.858463 |
Target: 5'- gGCCGgcgucagcguucgcaGCCCggCU-CCGCGCagggcucGGGCAAGc -3' miRNA: 3'- -UGGC---------------UGGGuaGAuGGCGCG-------CCCGUUC- -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 147255 | 0.66 | 0.880267 |
Target: 5'- cGCUGGCCgCGUCgcugauggacaaguuUGCCGCGUugcaGGaGCAGGg -3' miRNA: 3'- -UGGCUGG-GUAG---------------AUGGCGCG----CC-CGUUC- -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 157165 | 0.66 | 0.86138 |
Target: 5'- uGCUGucGCCCGUCUuucccggcggcgaaACCGCGCGcaaGGaCAAGu -3' miRNA: 3'- -UGGC--UGGGUAGA--------------UGGCGCGC---CC-GUUC- -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 115318 | 0.66 | 0.863548 |
Target: 5'- gACCGACUuaaaCAUCaaggGCCGCugcgugGUGGGCGAa -3' miRNA: 3'- -UGGCUGG----GUAGa---UGGCG------CGCCCGUUc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 117251 | 0.66 | 0.875507 |
Target: 5'- aGCCG-CCgAaaguaacguagaacUCUGCCGCGC-GGCAAa -3' miRNA: 3'- -UGGCuGGgU--------------AGAUGGCGCGcCCGUUc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 151243 | 0.66 | 0.856256 |
Target: 5'- cGCCGcucCUCGUCUGCCgugaucaagcgGCGCGGcGCGGa -3' miRNA: 3'- -UGGCu--GGGUAGAUGG-----------CGCGCC-CGUUc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 77999 | 0.66 | 0.863548 |
Target: 5'- cGCCGcCUCAUCUccacccGCCGuCGCaGGCGAc -3' miRNA: 3'- -UGGCuGGGUAGA------UGGC-GCGcCCGUUc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 187193 | 0.66 | 0.890777 |
Target: 5'- gGCCGGCCC-UCggGgUGCGgGuGGCGGGc -3' miRNA: 3'- -UGGCUGGGuAGa-UgGCGCgC-CCGUUC- -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 202628 | 0.66 | 0.863548 |
Target: 5'- cGCCGACUCG-CUGCCGCaguugcuggaGCGcGGCc-- -3' miRNA: 3'- -UGGCUGGGUaGAUGGCG----------CGC-CCGuuc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 183071 | 0.66 | 0.877559 |
Target: 5'- gACUGAUCCAggcguCgGCGuUGGGCAAGg -3' miRNA: 3'- -UGGCUGGGUagau-GgCGC-GCCCGUUC- -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 40521 | 0.66 | 0.884269 |
Target: 5'- -gCGACCCGgcgcgCUACCGCucaCGGGgacCGAGg -3' miRNA: 3'- ugGCUGGGUa----GAUGGCGc--GCCC---GUUC- -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 149205 | 0.66 | 0.890777 |
Target: 5'- gGCCGGCCUuuuguggguUCUGUCGCGUGGccaccGCGAGu -3' miRNA: 3'- -UGGCUGGGu--------AGAUGGCGCGCC-----CGUUC- -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 152068 | 0.66 | 0.884269 |
Target: 5'- cGCCGgguccACCCGgaccaCGCGCGGGUAGu -3' miRNA: 3'- -UGGC-----UGGGUagaugGCGCGCCCGUUc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 192660 | 0.66 | 0.890777 |
Target: 5'- -gCGGCUCGUC-GCCGUGUGGcGCGGc -3' miRNA: 3'- ugGCUGGGUAGaUGGCGCGCC-CGUUc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 196689 | 0.66 | 0.890777 |
Target: 5'- aGCCGAUggugCUGCUggGCGCGuGGCAGGa -3' miRNA: 3'- -UGGCUGgguaGAUGG--CGCGC-CCGUUC- -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 197571 | 0.66 | 0.877559 |
Target: 5'- cGCgGAgCCAUCUA-CGCGCcugucaGGGCGAu -3' miRNA: 3'- -UGgCUgGGUAGAUgGCGCG------CCCGUUc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 193928 | 0.66 | 0.877559 |
Target: 5'- uCCGGCCCcgacacCUACCuuCGCGGGUAc- -3' miRNA: 3'- uGGCUGGGua----GAUGGc-GCGCCCGUuc -5' |
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29799 | 5' | -59 | NC_006273.1 | + | 227381 | 0.66 | 0.863548 |
Target: 5'- gGCCGAUCgA-CUGCCGCaugagaGCGGGUg-- -3' miRNA: 3'- -UGGCUGGgUaGAUGGCG------CGCCCGuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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