miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29799 5' -59 NC_006273.1 + 146298 1.08 0.002721
Target:  5'- aACCGACCCAUCUACCGCGCGGGCAAGg -3'
miRNA:   3'- -UGGCUGGGUAGAUGGCGCGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 38538 0.79 0.24693
Target:  5'- cGCCGGCCCcgCcgcgcaacccagccACCGCGCGGGCAGc -3'
miRNA:   3'- -UGGCUGGGuaGa-------------UGGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 233431 0.79 0.24693
Target:  5'- cGCCGGCCCcgCcgcgcaacccagccACCGCGCGGGCAGc -3'
miRNA:   3'- -UGGCUGGGuaGa-------------UGGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 129409 0.75 0.379099
Target:  5'- cACCGcuuuACCUAUCUGCCG-GUGGGCAGu -3'
miRNA:   3'- -UGGC----UGGGUAGAUGGCgCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 163028 0.75 0.411303
Target:  5'- cUCGACCCAgcagcGCCcacaGCGCGGGCGAGa -3'
miRNA:   3'- uGGCUGGGUaga--UGG----CGCGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 118314 0.74 0.428027
Target:  5'- uGCCG-CCUcgCUACCGCGuCGGGUucuGAGg -3'
miRNA:   3'- -UGGCuGGGuaGAUGGCGC-GCCCG---UUC- -5'
29799 5' -59 NC_006273.1 + 39569 0.74 0.436539
Target:  5'- uCCGGCCCcgCgGCCGCGaccgagGGGCGGGg -3'
miRNA:   3'- uGGCUGGGuaGaUGGCGCg-----CCCGUUC- -5'
29799 5' -59 NC_006273.1 + 234462 0.74 0.436539
Target:  5'- uCCGGCCCcgCgGCCGCGaccgagGGGCGGGg -3'
miRNA:   3'- uGGCUGGGuaGaUGGCGCg-----CCCGUUC- -5'
29799 5' -59 NC_006273.1 + 145751 0.73 0.507881
Target:  5'- -gCGGCUCAUCgaccCCGUGaCGGGCGAGg -3'
miRNA:   3'- ugGCUGGGUAGau--GGCGC-GCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 143415 0.73 0.517157
Target:  5'- cGCCGGCgCGgcCUGCCGCGCGuuggagaacGGCAAGc -3'
miRNA:   3'- -UGGCUGgGUa-GAUGGCGCGC---------CCGUUC- -5'
29799 5' -59 NC_006273.1 + 103546 0.73 0.524626
Target:  5'- aGCCGGCCagccccagGCCGUGCGGGCuGGu -3'
miRNA:   3'- -UGGCUGGguaga---UGGCGCGCCCGuUC- -5'
29799 5' -59 NC_006273.1 + 197749 0.72 0.574059
Target:  5'- -gCGugCCuUUUGCCGCGCGGGUc-- -3'
miRNA:   3'- ugGCugGGuAGAUGGCGCGCCCGuuc -5'
29799 5' -59 NC_006273.1 + 154366 0.72 0.57406
Target:  5'- cACCGucucuuugaucuGCCCGUCUACUGCGUGGuCAAc -3'
miRNA:   3'- -UGGC------------UGGGUAGAUGGCGCGCCcGUUc -5'
29799 5' -59 NC_006273.1 + 73373 0.71 0.593382
Target:  5'- aGCgGGCCCAgagUCgcaaAgCGCGCGGGCAGc -3'
miRNA:   3'- -UGgCUGGGU---AGa---UgGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 118111 0.71 0.622542
Target:  5'- aACgCGAUCUGUUUGCCGCGC-GGCAGa -3'
miRNA:   3'- -UG-GCUGGGUAGAUGGCGCGcCCGUUc -5'
29799 5' -59 NC_006273.1 + 198893 0.7 0.68085
Target:  5'- cGCgCGAgCCCGUCaUGCCGC-UGGGCGAa -3'
miRNA:   3'- -UG-GCU-GGGUAG-AUGGCGcGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 31194 0.7 0.687598
Target:  5'- uGCCGGCCggCGUCcaggcugcccugguUGCCGCuGCGGGUAAc -3'
miRNA:   3'- -UGGCUGG--GUAG--------------AUGGCG-CGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 213017 0.69 0.709612
Target:  5'- cGCCGaACCgCGUCUgguACCGCuacuGUGGGCGAu -3'
miRNA:   3'- -UGGC-UGG-GUAGA---UGGCG----CGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 179074 0.69 0.709612
Target:  5'- aGCCaACCC-UCUGCUuuUGCGGGCAAGc -3'
miRNA:   3'- -UGGcUGGGuAGAUGGc-GCGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 221806 0.69 0.709612
Target:  5'- -gCGGCCCGg--GCCGCccgGCGGGUGAGc -3'
miRNA:   3'- ugGCUGGGUagaUGGCG---CGCCCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.