miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29799 5' -59 NC_006273.1 + 153625 0.66 0.858463
Target:  5'- gGCCGgcgucagcguucgcaGCCCggCU-CCGCGCagggcucGGGCAAGc -3'
miRNA:   3'- -UGGC---------------UGGGuaGAuGGCGCG-------CCCGUUC- -5'
29799 5' -59 NC_006273.1 + 151243 0.66 0.856256
Target:  5'- cGCCGcucCUCGUCUGCCgugaucaagcgGCGCGGcGCGGa -3'
miRNA:   3'- -UGGCu--GGGUAGAUGG-----------CGCGCC-CGUUc -5'
29799 5' -59 NC_006273.1 + 136696 0.67 0.848781
Target:  5'- gACCGGCCgGUCgccGCCGCcGCGGuuGCu-- -3'
miRNA:   3'- -UGGCUGGgUAGa--UGGCG-CGCC--CGuuc -5'
29799 5' -59 NC_006273.1 + 213634 0.67 0.848023
Target:  5'- aGCgaGGCCCccaggcagcugagAUCUACCGC-CaGGGCGAGa -3'
miRNA:   3'- -UGg-CUGGG-------------UAGAUGGCGcG-CCCGUUC- -5'
29799 5' -59 NC_006273.1 + 141066 0.67 0.841127
Target:  5'- cACCGucucgcuuuucCCCGUCUACCaCGUcGGCAAGu -3'
miRNA:   3'- -UGGCu----------GGGUAGAUGGcGCGcCCGUUC- -5'
29799 5' -59 NC_006273.1 + 119090 0.67 0.841127
Target:  5'- cGCCGuCCCG-CggguCCGCaCGGGCAAa -3'
miRNA:   3'- -UGGCuGGGUaGau--GGCGcGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 90966 0.67 0.833302
Target:  5'- cCCGAaCCGUCcGCCGcCGCGGcGCcGGg -3'
miRNA:   3'- uGGCUgGGUAGaUGGC-GCGCC-CGuUC- -5'
29799 5' -59 NC_006273.1 + 171138 0.67 0.833302
Target:  5'- cGCCGcaacGCCCGU--GCC-CGCGGGCcAGg -3'
miRNA:   3'- -UGGC----UGGGUAgaUGGcGCGCCCGuUC- -5'
29799 5' -59 NC_006273.1 + 212262 0.67 0.830922
Target:  5'- cACCGAguugcgguguucugUCUGUCUACUGgGUGGGgGAGg -3'
miRNA:   3'- -UGGCU--------------GGGUAGAUGGCgCGCCCgUUC- -5'
29799 5' -59 NC_006273.1 + 19165 0.67 0.830921
Target:  5'- cGCCG-CCCAUgUGCCGCGCuccguacaacgaauGcGGCGu- -3'
miRNA:   3'- -UGGCuGGGUAgAUGGCGCG--------------C-CCGUuc -5'
29799 5' -59 NC_006273.1 + 84041 0.67 0.82531
Target:  5'- cGCCGGCgCCAaaUgaGCCGCgaagcgGCGGGCGGa -3'
miRNA:   3'- -UGGCUG-GGU--AgaUGGCG------CGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 116937 0.67 0.82531
Target:  5'- cGCCGAUUCAgaUCUACCaugucuuuGgGCGGGCucuGGg -3'
miRNA:   3'- -UGGCUGGGU--AGAUGG--------CgCGCCCGu--UC- -5'
29799 5' -59 NC_006273.1 + 199332 0.67 0.81716
Target:  5'- uUUGACUCGcucucgucgcUCUAuCUGCGCGGGCAGc -3'
miRNA:   3'- uGGCUGGGU----------AGAU-GGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 167381 0.67 0.81716
Target:  5'- cGCC-ACCCAUgacGCCGC-CGGGCAGa -3'
miRNA:   3'- -UGGcUGGGUAga-UGGCGcGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 213079 0.68 0.800409
Target:  5'- cGuuGGCgCcgCUGCCGCGuCGGGUAc- -3'
miRNA:   3'- -UggCUGgGuaGAUGGCGC-GCCCGUuc -5'
29799 5' -59 NC_006273.1 + 113623 0.68 0.791823
Target:  5'- aGCCGACgCUGUUauucaCGCGuCGGGCAAGc -3'
miRNA:   3'- -UGGCUG-GGUAGaug--GCGC-GCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 124424 0.68 0.783107
Target:  5'- -gCGACaCGUgCUgcgGCCGCGCGGGCGu- -3'
miRNA:   3'- ugGCUGgGUA-GA---UGGCGCGCCCGUuc -5'
29799 5' -59 NC_006273.1 + 113508 0.68 0.783107
Target:  5'- aGCCGgcggcggguuGCCCGgggGgCGCGCGGGCGGc -3'
miRNA:   3'- -UGGC----------UGGGUagaUgGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 132115 0.68 0.783106
Target:  5'- gACCGcuGCCCGUCUACCGCGUa------ -3'
miRNA:   3'- -UGGC--UGGGUAGAUGGCGCGcccguuc -5'
29799 5' -59 NC_006273.1 + 23769 0.68 0.783106
Target:  5'- aGCCGGCCauaAUC-ACCGuCGauGGCAGGu -3'
miRNA:   3'- -UGGCUGGg--UAGaUGGC-GCgcCCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.